This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3GJ.1

China/LOC_000Q3GJ.1/1988
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Wuhan Institute of Virology, Chinese Academy of Sciences

Sample details

Collection date
1988
Earliest release date
2023-08-21
Sampling location
China
Isolate name
88017

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-04 18:29insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-21
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
OR047183.1.L/OR047163.1.M/OR047143.1.S
Submitting group
Date submitted
2026-03-04 18:29:04 UTC
Date released
2026-03-04 18:32:42 UTC

Files

Annotations

Alignment and QC

Total SNPs M
613
Total inserted nucs M
1
Total deleted nucs M
11
Length M
5327 (97.8%)
Variant M
False
Total SNPs S
224
Total inserted nucs S
50
Total deleted nucs S
11
Length S
1716 (92.9%)
Variant S
False
Total SNPs L
1627
Total inserted nucs L
175
Length L
12283 (100%)
Variant L
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • T1G
  • C2G
  • T3A
  • A5C
  • A6G
  • A7C
  • G8C
  • A9C
  • T10G
  • A11C
  • T12C
  • A14G
  • A15C
  • T16C
  • G23T
  • A35G
  • G43C
  • T49C

M segment

  • T64C
  • G65A
  • G72A
  • A76G
  • T78C
  • C82T
  • A84G
  • C88T
  • A108G
  • T116C
  • C118T
  • A127G
  • G132A
  • C133T
  • A139G
  • A143G
  • G145A
  • A149C

S segment

  • T16A
  • C31G
  • T32C
  • G34A
  • A45G
  • C48T
  • G75A
  • A84G
  • A98T
  • A102G
  • C123T
  • C126T
  • T141C
  • C150T
  • T166C
  • C171A
  • A173G
  • C183T
Deletions

M segment

5285-5295

S segment

1596, 1597, 1653-1661
Insertions

L segment

ins_0:TCGCCTCGCGGC, ins_58:T, ins_11925:GT, ins_12027:CTCT, ins_12082:CATCCTGCTATT, ins_12108:TTCATTATTTCCAGGGTGTGGGGGGAACGATTTCTTACTCCTGCCCCAGCATGCAGAAGGACGCCTCTTTGAGCGGCTTCCTGCCTAGTTTCCAGCATTTCGCCACTCAGGCCATCCACGTGGGACAAGAGCCTGAGCAATGGA

M segment

ins_5166:A

S segment

ins_0:GCCCTAACACCCAGCTGGCCCGCAACGATATCTTCTCAAAGAAACACGT, ins_1514:T

Amino acid mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:Y7C
  • GPC:F10L
  • GPC:C15Y
  • GPC:K19E
  • GPC:N21H
  • GPC:P23S
  • GPC:H24S
  • GPC:G26E
  • GPC:N31K
  • GPC:H33N
  • GPC:M35V
  • GPC:D39G
  • GPC:P47L
  • GPC:A51T
  • GPC:P56L
  • GPC:P58S
  • GPC:S64T
  • GPC:L70P

NP

  • NP:Y20F
  • NP:D44E
  • NP:K45R
  • NP:D116E
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:S275N
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:I45M
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
  • RdRp:I279V
Deletions
N/A
Insertions
N/A

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