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LOC_000Q3GJ.1
Download
Download FASTA
Download metadata TSV
China/LOC_000Q3GJ.1/1973
A. Moming,
Q. Zhu,
Y. Bai,
J. Jin,
Q. Wu,
Z. Su,
S. Tang,
Y. Zhang,
S. Shen &
F. Deng
Wuhan Institute of Virology, Chinese Academy of Sciences
Sample details
Collection date
1973
Earliest release date
2023-08-21
Sampling location
China
Isolate name
A73017
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-13 15:41
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-08-21
INSDC accession L
OR047180.1
INSDC accession M
OR047160.1
INSDC accession S
OR047140.1
Submission details
Submission ID
OR047180.1.L/OR047160.1.M/OR047140.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-13 15:41:04 UTC
Date released
2026-03-13 15:51:39 UTC
Host
Host
Homo sapiens
Lineage
Segment S Lineage
IV.2
Files
annotations
LOC_000Q3GJ.1.embl
Alignment and QC
Total SNPs M
610
Total inserted nucs M
46
Total deleted nucs M
11
Length M
5401 (100%)
Variant M
False
Total SNPs L
1612
Total inserted nucs L
60
Length L
12168 (100%)
Variant L
False
Total SNPs S
185
Length S
1501 (89.8%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
T
10
C
G
23
T
A
35
G
G
43
C
T
49
C
A
50
G
C
63
G
C
64
T
T
65
C
T
66
C
G
69
A
G
71
T
G
88
A
G
93
A
A
109
G
A
124
G
T
131
A
C
136
T
Show more
M
T
1
C
C
2
T
G
32
T
T
68
C
G
76
A
A
80
G
C
85
T
A
88
G
C
92
T
A
107
G
A
112
G
A
117
G
C
119
T
C
126
T
A
128
G
G
136
A
A
146
G
G
149
A
Show more
S
T
48
C
G
54
A
A
61
G
C
64
T
G
67
A
G
91
A
G
99
A
A
118
G
A
138
T
C
139
T
C
142
T
A
146
C
A
156
C
T
157
C
C
166
T
A
170
G
T
172
G
C
178
A
Show more
Deletions
M
5289-5299
Insertions
L
ins_58:T, ins_11930:AA, ins_12054:TACAGTTCT, ins_12083:GCTATTT, ins_12108:TTCATTATTTCCAGGGTGTGGGGGGAACTTTTTCTTTGAGA
M
ins_5168:G, ins_5366:AAGGCAAGAGCAGCATCCGGAGCAGTCTCAGCCTGCCCAGCATCC
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
Y
7
C
GPC:
I
9
V
GPC:
C
15
Y
GPC:
H
24
S
GPC:
R
28
E
GPC:
D
33
N
GPC:
T
34
V
GPC:
M
35
V
GPC:
N
41
S
GPC:
P
42
Q
GPC:
S
44
R
GPC:
E
45
G
GPC:
P
47
L
GPC:
V
48
G
GPC:
A
51
T
GPC:
S
53
P
GPC:
I
54
V
GPC:
P
58
S
Show more
NP
NP:
R
15
K
NP:
D
28
V
NP:
T
31
P
NP:
Y
34
S
NP:
S
39
G
NP:
D
44
E
NP:
R
45
G
NP:
V
47
G
NP:
Q
49
R
NP:
S
52
G
NP:
D
56
G
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
K
206
I
Show more
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
I
45
M
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
D
88
A
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
E
167
G
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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