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LOC_000Q2XN.1
Download
Download FASTA
Download metadata TSV
Turkey/LOC_000Q2XN.1/2015
A. T. Kalaycioglu,
R. Durmaz,
O. Ari,
M. Bakir,
A. Engin &
T. Dal
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology
Sample details
Collection date
2015
Earliest release date
2023-08-15
Sampling location
Turkey
Isolate name
TR-TOKAT-C42M-2015
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-13 15:41
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-08-15
INSDC accession L
OQ954473.1
INSDC accession M
OQ935548.1
INSDC accession S
OQ954465.1
Submission details
Submission ID
OQ954473.1.L/OQ935548.1.M/OQ954465.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-13 15:41:04 UTC
Date released
2026-03-13 15:51:39 UTC
Host
Host
Homo sapiens
Lineage
Segment S Lineage
V
Files
annotations
LOC_000Q2XN.1.embl
Alignment and QC
Total SNPs L
51
Length L
468 (3.87%)
Variant L
False
Total SNPs M
86
Length M
554 (10.3%)
Variant M
False
Total SNPs S
75
Length S
519 (31%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
C
6715
T
A
6724
G
A
6730
G
G
6733
T
T
6745
C
G
6748
A
A
6751
G
C
6757
T
T
6760
A
C
6766
T
T
6769
C
A
6784
T
T
6800
C
G
6805
A
A
6808
T
A
6811
G
A
6850
G
T
6859
C
Show more
M
C
1754
T
T
1763
C
C
1766
T
T
1772
C
C
1781
T
A
1784
G
A
1805
G
C
1808
T
C
1811
T
T
1820
C
A
1823
G
G
1828
A
G
1845
A
T
1853
C
G
1865
A
A
1867
C
T
1868
C
A
1874
G
Show more
S
T
157
C
C
166
T
G
171
A
T
175
A
C
178
A
T
182
C
C
187
T
G
189
A
T
199
C
T
211
C
C
217
A
C
244
T
T
250
G
G
256
A
G
262
A
A
268
C
T
274
C
T
283
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
R
579
K
GPC:
E
585
K
GPC:
N
592
T
GPC:
V
598
T
GPC:
Y
606
F
GPC:
R
609
K
GPC:
T
633
S
GPC:
I
637
V
GPC:
K
669
H
GPC:
K
675
R
GPC:
K
688
R
GPC:
L
707
F
GPC:
A
710
V
GPC:
I
711
L
GPC:
L
714
S
GPC:
V
718
I
GPC:
R
724
K
GPC:
L
725
I
NP
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
RdRp
RdRp:
A
2330
T
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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