This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q2Q2.1

Saudi_Arabia/LOC_000Q2Q2.1/2019
F. Zakham, A. E. Albalawi, A. D. Alanazi, P. Truong Nguyen, A. S. Alouffi, A. Alaoui, T. Sironen, T. Smura, O. Vapalahti & P. T. Truong Nguyen

University of Helsinki, Department of Virology

Sample details

Collection date
2019
Earliest release date
2021-09-06
Sampling location
Saudi Arabia (Al-Khurma)
Isolate name
KSA_3

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-04 16:51insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2021-09-06
INSDC accession L segment

Host

Host

Submission details

Submission ID
MZ566478.1.L
Submitting group
Date submitted
2026-06-04 16:51:08 UTC
Date released
2026-06-04 16:54:45 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
177
Total deleted nucs L segment
37
Total frame shifts L segment
1
Frame shifts L segment
RdRp:959-3946(nt:2949-11914)
Length L segment
1109 (9.46%)
Stop codons L segment
RdRp:947
Total stop codons L segment
1

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • C2856G
  • C2858G
  • C2859G
  • C2865T
  • G2882C
  • A2885C
  • C2886T
  • T2887A
  • G2889T
  • A2893T
  • A2894C
  • A2895T
  • G2896T
  • A2897T
  • T2898A
  • A2901G
  • G2902A
  • G2903C
Deletions

L segment

2868-2879, 2924-2948
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:W938G
  • RdRp:E939V
  • RdRp:K940L
  • RdRp:K942Q
  • RdRp:E943L
  • RdRp:H944L
  • RdRp:I945D
  • RdRp:N947*
  • RdRp:P949L
Deletions

RdRp

RdRp:950-958
Insertions
N/A

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