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LOC_000Q2LA.1
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Download FASTA
Download metadata TSV
China/LOC_000Q2LA.1/2021-04-15
J. Wang,
B. Wang,
X. Xia,
J. Zhou &
Y. Wang
Kunming University of Science and Technology, Faculty of Life Science and Technology
Sample details
Collection date
2021-04-15
Earliest release date
2023-05-30
Sampling location
China
Isolate name
YNDQ-L415G
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-25 15:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-05-30
INSDC accession L
OQ633002.1
INSDC accession M
OQ633003.1
INSDC accession S
OQ633004.1
Submission details
Submission ID
OQ633002.1.L/OQ633003.1.M/OQ633004.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-25 15:11:29 UTC
Date released
2026-03-25 15:22:20 UTC
Host
Host
Capricornis milneedwardsii
Lineage
Segment S Lineage
unassigned
Files
Annotations
LOC_000Q2LA.1.embl
Alignment and QC
Total SNPs M
1445
Total inserted nucs M
48
Total deleted nucs M
15
Length M
5103 (94.5%)
Variant M
False
Total SNPs L
2406
Length L
11838 (97.8%)
Variant L
True
Total SNPs S
259
Length S
1449 (86.7%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
C
82
G
T
86
C
G
88
A
G
93
A
C
95
A
A
109
G
C
117
A
T
121
C
A
124
G
G
130
A
T
131
A
T
139
C
T
151
C
T
154
A
T
157
C
G
172
C
G
175
A
C
199
T
Show more
M
A
80
G
C
81
T
G
84
T
C
85
G
T
86
C
A
87
C
G
95
A
T
98
C
A
101
G
T
102
C
C
103
T
A
104
G
T
105
C
A
107
G
A
108
T
G
110
T
T
111
A
G
114
T
Show more
S
A
61
G
C
64
T
G
67
A
C
70
T
G
73
A
T
79
C
A
85
G
A
92
C
C
97
T
T
106
C
A
109
G
A
118
G
A
121
G
T
127
C
A
130
G
C
154
T
T
155
C
T
163
C
Show more
Deletions
M
672-686
Insertions
M
ins_146:GGATCTGTCAGT, ins_323:GCAACCACACAGGCCACCGGAGACACA, ins_386:CAAGACACA
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
I
GPC:
I
3
M
GPC:
S
4
L
GPC:
M
6
F
GPC:
Y
7
N
GPC:
A
8
L
GPC:
I
9
A
GPC:
C
11
H
GPC:
L
12
Q
GPC:
Q
13
L
GPC:
C
15
W
GPC:
L
17
G
GPC:
H
21
S
GPC:
G
22
T
GPC:
S
23
N
GPC:
H
24
S
GPC:
E
26
A
GPC:
R
28
Q
Show more
NP
NP:
M
13
L
NP:
Y
34
H
NP:
S
39
N
NP:
S
52
G
NP:
A
100
T
NP:
T
124
A
NP:
G
125
N
NP:
V
141
I
NP:
N
144
S
NP:
A
154
S
NP:
G
185
S
NP:
N
188
S
NP:
H
195
R
NP:
V
198
I
NP:
D
199
E
NP:
V
205
I
NP:
I
220
V
NP:
I
246
V
Show more
RdRp
RdRp:
D
2
E
RdRp:
S
6
N
RdRp:
L
7
I
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
H
56
Y
RdRp:
Y
60
N
RdRp:
I
61
V
RdRp:
S
67
V
RdRp:
Y
72
F
RdRp:
E
75
D
RdRp:
R
80
K
RdRp:
K
91
Q
RdRp:
L
94
T
RdRp:
A
122
T
RdRp:
D
135
E
RdRp:
I
157
M
RdRp:
T
163
V
Show more
Deletions
GPC
GPC:189-218
Insertions
GPC
ins_GPC:18:GSVS, ins_GPC:111:TKPNATSPNAST, ins_GPC:237:PSRIRATQDQHPITPEAKHPTAIAA
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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