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LOC_000Q1YM.1
Download
Download FASTA
Download metadata TSV
South_Africa/LOC_000Q1YM.1/1985
V. M. Deyde,
M. L. Khristova,
P. E. Rollin,
T. G. Ksiazek &
S. T. Nichol
Centers for Disease Control and Prevention, Special Pathogens Branch, Biotechnology Core Facility Branch
Sample details
Collection date
1985
Earliest release date
2006-08-16
Sampling location
South Africa
Isolate name
SPU415/85
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2006-08-16
INSDC accession L
DQ211622.1
INSDC accession S
DQ211648.1
Host
Host
human (Homo sapiens)
Is lab host
True
Submission details
Submission ID
DQ211622.1.L/DQ211648.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-02 14:57:47 UTC
Date released
2026-10-02 14:58:43 UTC
Lineage
Segment S Lineage
III
Files
Annotations
LOC_000Q1YM.1.embl
Alignment and QC
Total SNPs L
611
Total inserted nucs L
49
Length L
12157 (100%)
Total SNPs S
114
Total inserted nucs S
1
Length S
1673 (100%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
A
35
T
T
49
C
C
63
G
T
65
C
T
70
C
G
80
A
G
93
A
C
94
T
T
118
C
T
163
C
T
214
C
T
229
C
T
253
C
T
254
A
C
266
T
A
298
G
C
313
T
C
326
T
Show more
S
G
54
A
G
67
A
C
70
T
G
99
A
C
166
T
C
178
A
G
189
A
T
199
C
G
202
A
G
229
A
C
235
T
A
247
G
G
271
A
A
284
G
C
295
T
A
322
G
A
327
G
G
346
A
Show more
Deletions
N/A
Insertions
L
ins_12108:TTCATCATTGTTATTATTTTGGGGTGTGGGGGGAACGATTTCTTTGAGA
S
ins_1577:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
R
15
K
NP:
R
45
K
NP:
I
77
V
NP:
K
91
R
NP:
T
124
A
NP:
G
125
N
NP:
L
179
Q
NP:
H
195
R
NP:
I
246
V
NP:
S
301
G
NP:
S
367
T
NP:
K
428
R
NP:
V
436
I
NP:
A
479
V
RdRp
RdRp:
D
2
N
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
N
206
Y
RdRp:
T
481
I
RdRp:
S
498
N
RdRp:
I
505
T
RdRp:
R
764
K
RdRp:
T
767
A
RdRp:
R
770
K
RdRp:
N
779
S
RdRp:
I
783
T
RdRp:
S
789
T
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Reference-aligned nucleotide sequences
Reference-aligned amino acid sequences
L
M
S
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