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LOC_000Q1YM.1
Download
Download FASTA
Download metadata TSV
Turkey/LOC_000Q1YM.1/2015-09-03
J. D'Addiego,
N. Wand,
B. Afrough,
T. Fletcher,
Y. Kurosaki,
H. Leblebicioglu &
R. Hewson
UK Health Security Agency, Research & Evaluation
Sample details
Collection date
2015-09-03
Earliest release date
2023-08-29
Sampling location
Turkey
Isolate name
15_OS
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-13 15:41
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-08-29
INSDC accession L
OQ454801.1
INSDC accession M
OQ454802.1
INSDC accession S
OQ454803.1
Submission details
Submission ID
OQ454801.1.L/OQ454802.1.M/OQ454803.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-13 15:41:04 UTC
Date released
2026-03-13 15:51:39 UTC
Host
Host
Homo sapiens
Lineage
Segment S Lineage
V
Files
annotations
LOC_000Q1YM.1.embl
Alignment and QC
Total SNPs S
239
Total inserted nucs S
1
Total deleted nucs S
41
Length S
1561 (95.8%)
Variant S
False
Total SNPs L
547
Length L
5099 (42.1%)
Variant L
False
Total SNPs M
492
Total unknown nucs M
1
Length M
3055 (56.9%)
Variant M
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
T
202
C
C
223
T
T
229
C
A
240
C
T
250
C
T
254
A
A
262
G
G
264
A
C
265
T
A
268
G
C
276
T
A
310
G
C
313
T
G
315
A
A
316
G
G
328
A
C
331
T
C
332
T
Show more
M
T
1271
G
A
1273
G
C
1274
T
A
1277
G
G
1280
A
C
1292
T
T
1299
C
G
1301
A
A
1303
G
G
1304
A
G
1310
A
A
1311
G
T
1325
C
G
1331
A
G
1332
A
A
1337
G
C
1352
T
C
1355
T
Show more
S
T
79
C
A
81
G
G
99
A
G
100
A
A
109
G
C
115
T
A
121
G
G
134
A
C
142
T
T
157
C
C
166
T
G
171
A
T
175
G
C
178
A
T
182
C
C
187
T
G
189
A
T
199
C
Show more
Deletions
S
1596-1605, 1632-1662
Insertions
S
ins_1577:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
N
394
S
GPC:
K
404
R
GPC:
I
407
V
GPC:
V
414
I
GPC:
V
423
I
GPC:
K
435
N
GPC:
I
445
T
GPC:
A
448
P
GPC:
H
453
R
GPC:
V
459
T
GPC:
F
482
V
GPC:
D
484
N
GPC:
R
507
K
GPC:
R
517
K
GPC:
S
524
G
GPC:
G
543
D
GPC:
R
579
K
GPC:
N
592
T
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
G
184
S
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
Show more
RdRp
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
I
223
L
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
N
453
S
RdRp:
I
505
T
RdRp:
A
508
I
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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