This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q1YM.1

Uganda/LOC_000Q1YM.1/2013-08-18
S. Balinandi, S. Whitmer, S. Mulei, L. Nyakarahuka, A. Tumusiime, J. Kyondo, L. Mugisha, M. Almberg, J. Lutwama, T. Shoemaker & J. D. Klena

CDC, VSPB

Sample details

Collection date
2013-08-18
Earliest release date
2021-09-19
Sampling location
Uganda
Isolate name
201301846

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2021-09-19
INSDC accession S

Host

Host

Submission details

Submission ID
MW464944.1.S
Submitting group
Date submitted
2026-08-07 11:59:41 UTC
Date released
2026-08-07 12:04:42 UTC

Lineage

Segment S Lineage
II

Files

Annotations

Alignment and QC

Total SNPs S
181
Total deleted nucs S
15
Total ambiguous nucs S
2
Total unknown nucs S
3
Length S
1097 (66.2%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • A466T
  • C484T
  • C487T
  • A490G
  • T496C
  • A506C
  • C514T
  • C523T
  • G559A
  • C563T
  • T577C
  • G580A
  • C590T
  • A598T
  • G604A
  • A631G
  • A639G
  • A649G
Deletions

S

1539-1553
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:K151Q
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275G
  • NP:I277V
  • NP:S301G
  • NP:A307P
  • NP:Y311F
  • NP:T320S
  • NP:Q370E
  • NP:V436I
Deletions
N/A
Insertions
N/A

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