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LOC_000Q1LB.1
Download
Download FASTA
Download metadata TSV
Senegal/LOC_000Q1LB.1/1972
V. M. Deyde,
M. L. Khristova,
P. E. Rollin,
T. G. Ksiazek &
S. T. Nichol
Centers for Disease Control and Prevention, Special Pathogens Branch, Biotechnology Core Facility Branch
Sample details
Collection date
1972
Earliest release date
2006-08-16
Sampling location
Senegal
Isolate name
ArD15786
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2006-08-16
INSDC accession L segment
DQ211614.1
INSDC accession M segment
DQ211627.1
INSDC accession S segment
DQ211640.1
Host
Host
domestic goat; goat; goats (Capra hircus)
Submission details
Submission ID
DQ211614.1.L/DQ211627.1.M/DQ211640.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-13 10:58:14 UTC
Date released
2026-10-13 11:00:00 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (OR047158.1) (variant)
Closest reference S segment
S11 (MK299338.1) (variant)
Files
Annotations
LOC_000Q1LB.1.embl
Alignment and QC
Total SNPs M segment
1235
Total inserted nucs M segment
3
Total deleted nucs M segment
16
Length M segment
5386 (100%)
Total SNPs S segment
320
Total inserted nucs S segment
14
Total deleted nucs S segment
8
Length S segment
1686 (100%)
Total SNPs L segment
257
Total inserted nucs L segment
52
Length L segment
12160 (100%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
MK299338.1
references
Substitutions
L segment
T
65
C
T
67
C
T
70
C
G
93
A
G
226
A
T
241
C
C
244
T
T
254
A
A
298
G
A
310
G
C
313
T
T
340
C
C
427
A
G
457
A
T
550
G
G
553
A
G
619
A
T
781
C
Show more
M segment
C
3
T
A
5
T
G
6
C
C
7
A
G
8
A
C
9
A
C
10
G
G
11
A
C
15
A
C
17
T
C
18
T
C
21
G
G
24
A
G
29
A
C
30
G
G
31
T
G
32
A
G
36
A
Show more
S segment
C
22
T
T
38
C
A
48
T
G
72
A
G
80
A
C
87
T
T
90
G
G
99
A
A
108
G
T
126
C
C
138
T
C
141
T
T
153
C
C
156
T
C
159
T
T
162
C
A
168
G
T
171
C
Show more
Deletions
M segment
5213-5217, 5245, 5271-5278, 5365, 5366
S segment
1520-1522, 1636-1640
Insertions
L segment
ins_12108:TTCATCATCATCGTTATTATCTTGGGGTGTGGGGGGAACGATTTCTTTGAGA
M segment
ins_39:GTT
S segment
ins_0:T, ins_1580:TTTGCAGTTAC, ins_1680:GA
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
OR047158.1
&
MK299338.1
references
Substitutions
GPC
GPC:
L
2
F
GPC:
F
3
L
GPC:
E
6
K
GPC:
H
7
F
GPC:
M
8
V
GPC:
I
11
T
GPC:
V
14
F
GPC:
I
18
L
GPC:
S
21
G
GPC:
L
25
V
GPC:
A
26
T
GPC:
D
27
S
GPC:
E
28
G
GPC:
A
29
G
GPC:
R
30
G
GPC:
S
33
T
GPC:
M
35
S
GPC:
G
38
A
Show more
NP
NP:
S
9
N
NP:
D
12
E
NP:
Y
48
F
NP:
S
52
G
NP:
T
65
S
NP:
F
73
Y
NP:
K
91
R
NP:
S
101
G
NP:
I
117
V
NP:
S
124
A
NP:
S
125
N
NP:
I
141
V
NP:
T
146
A
NP:
A
154
S
NP:
L
163
V
NP:
V
164
M
NP:
P
165
S
NP:
I
179
L
Show more
RdRp
RdRp:
S
6
N
RdRp:
M
50
I
RdRp:
Y
60
N
RdRp:
D
264
E
RdRp:
I
505
T
RdRp:
R
764
K
RdRp:
T
767
A
RdRp:
K
769
I
RdRp:
P
774
S
RdRp:
I
783
T
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
V
882
I
RdRp:
G
1047
E
RdRp:
G
1214
S
RdRp:
V
1228
I
RdRp:
N
1367
D
RdRp:
V
1601
I
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Reference-aligned nucleotide sequences
Reference-aligned amino acid sequences
L segment
M segment
S segment
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