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LOC_000Q1LB.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/LOC_000Q1LB.1/2009-09
J. Sereewit,
P. Hajian,
H. Xie &
A. L. Greninger
Sample details
Collection date
2009-09
Collection date (lower bound)
2009-09-01
Collection date (upper bound)
2009-09-30
Earliest release date
2023-05-09
Collection country
USA
Isolate name
EV-D68/USA/4E1/2009
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-01-22 15:57
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UW Virology, Laboratory Medicine
INSDC
NCBI release date
2023-05-09
NCBI update date
2023-05-09
INSDC accession
OQ791518.1
Bioproject accession
PRJNA939713
Biosample accession
SAMN33761317
Raw reads accession
SRR23866022
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics
Length
7341
Total SNPs
838
Total inserted nucs
1
Total deleted nucs
27
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
100.00%
Total stop codons
0
Submission details
Submission ID
OQ791518.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-22 15:57:03 UTC
Date released
2026-01-22 16:10:46 UTC
Genotype
Genotype
EV-D68
Nucleotide mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
T
11
C
C
12
T
T
28
C
C
62
T
A
88
T
T
89
C
C
95
T
C
101
T
C
114
T
T
118
C
C
122
T
A
124
G
A
132
G
A
140
G
C
156
T
T
158
C
C
177
T
T
187
C
Show more
Deletions
679-702, 2806-2808
Insertions
ins_26:C
Amino acid mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
2A
2A:
I
22
T
2A:
R
65
K
2A:
I
71
V
2A:
V
144
A
2B
2B:
I
64
V
2C
2C:
T
34
N
2C:
K
58
S
2C:
R
72
Q
2C:
S
98
A
2C:
A
102
T
2C:
I
154
V
2C:
N
273
D
2C:
T
275
A
2C:
V
304
I
3A
3A:
I
8
V
3A:
A
13
T
3A:
V
53
L
3C
3C:
V
30
I
3C:
I
46
T
3C:
R
55
K
3C:
L
77
M
3C:
C
93
Y
3D
3D:
N
6
S
3D:
M
11
V
3D:
V
88
I
3D:
N
95
S
3D:
E
101
D
3D:
S
135
T
3D:
K
139
R
3D:
I
212
V
3D:
D
222
N
3D:
V
277
I
3D:
I
278
V
3D:
K
307
R
3D:
V
349
I
3D:
I
360
V
VP1
VP1:
S
1
L
VP1:
N
2
D
VP1:
H
5
D
VP1:
G
6
A
VP1:
V
13
I
VP1:
T
46
S
VP1:
G
76
S
VP1:
K
84
R
VP1:
S
95
E
VP1:
G
97
Q
VP1:
H
99
D
VP1:
I
131
V
VP1:
N
140
S
VP1:
G
141
S
VP1:
N
142
S
VP1:
T
146
K
VP1:
M
148
T
VP1:
E
169
K
Show more
VP2
VP2:
S
59
A
VP2:
R
67
K
VP2:
S
73
T
VP2:
N
74
E
VP2:
H
135
Y
VP2:
D
136
N
VP2:
N
144
T
VP2:
R
151
E
VP2:
N
156
S
VP2:
I
167
L
VP2:
V
195
A
VP2:
V
211
I
VP2:
M
222
V
VP2:
V
225
M
VP3
VP3:
I
40
V
VP3:
M
46
V
VP3:
I
47
V
VP3:
D
59
E
VP3:
G
60
N
VP3:
N
62
V
VP3:
E
65
Q
VP3:
R
68
K
VP3:
Q
74
L
VP3:
A
75
T
VP3:
L
77
V
VP3:
I
163
V
VP3:
I
166
V
VP3:
S
180
N
VP3:
D
208
N
VP3:
I
216
V
Deletions
VP1:144
Insertions
None
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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