This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q1LB.1

India/LOC_000Q1LB.1/2019
P. Yadav, A. Shete-Aich, D. Nyayanit & R. Sahay

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date
2019
Earliest release date
2021-08-07
Sampling location
India (Gujarat State, Bhavnagar)
Isolate name
MCL-19-H-3460

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2021-08-07
INSDC accession S

Host

Host

Submission details

Submission ID
MW298552.1.S
Submitting group
Date submitted
2026-07-07 12:47:52 UTC
Date released
2026-07-07 12:51:35 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Alignment and QC

Total SNPs S
227
Total inserted nucs S
2
Length S
1635 (97.7%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • A50G
  • G54A
  • G67A
  • T79C
  • C82T
  • G99A
  • A109G
  • A118G
  • T157C
  • C166T
  • G169A
  • T172C
  • C178A
  • G190A
  • G196A
  • T199C
  • C208T
  • C217T
Deletions
N/A
Insertions

S

ins_1529:C, ins_1581:C

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:R15K
  • NP:V83A
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S301G
  • NP:A307V
  • NP:E322D
  • NP:Q405L
  • NP:V436I
Deletions
N/A
Insertions
N/A

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