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LOC_000Q0MA.1
Download
Download FASTA
Download metadata TSV
India/LOC_000Q0MA.1/2019
P. Yadav,
A. Shete-Aich,
D. Nyayanit &
R. Sahay
National Institute of Virology, Maximum Containment Laboratory
Sample details
Collection date
2019
Earliest release date
2021-08-07
Sampling location
India (Gujarat State, Amreli)
Isolate name
MCL-19-H-3232
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-17 13:01
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2021-08-07
INSDC accession L segment
MW298536.1
INSDC accession M segment
MW298544.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MW298536.1.L/MW298544.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-17 13:01:14 UTC
Date released
2026-06-17 13:04:59 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Files
Annotations
LOC_000Q0MA.1.embl
Alignment and QC
Total SNPs L segment
1620
Total inserted nucs L segment
33
Total deleted nucs L segment
21
Length L segment
12119 (100%)
Total SNPs M segment
341
Total inserted nucs M segment
1
Length M segment
5337 (97.8%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
MH396653.1
references
Substitutions
L segment
T
10
C
G
23
C
A
35
G
G
43
C
C
48
T
T
49
C
C
59
T
T
62
C
C
64
T
T
65
G
G
71
T
A
72
T
C
85
T
G
93
A
A
109
G
G
112
A
T
121
C
T
131
A
Show more
M segment
G
51
A
A
53
G
G
65
A
G
72
A
T
78
C
A
97
G
A
127
G
C
133
T
G
145
A
T
148
C
A
149
C
C
151
T
C
155
T
G
166
A
A
171
G
T
181
A
C
185
G
A
204
G
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Deletions
L segment
11967-11985, 12076, 12077
Insertions
L segment
ins_25:T, ins_66:CC, ins_11931:AT, ins_12053:CTACAATTCTCTCAACC, ins_12108:TTTATTAATTC
M segment
ins_5166:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
&
MH396653.1
references
Substitutions
GPC
GPC:
I
3
M
GPC:
N
21
H
GPC:
P
23
S
GPC:
E
28
G
GPC:
N
31
K
GPC:
H
33
D
GPC:
D
39
G
GPC:
P
47
L
GPC:
V
54
F
GPC:
S
64
T
GPC:
P
66
L
GPC:
G
69
I
GPC:
V
76
P
GPC:
S
80
P
GPC:
I
82
A
GPC:
P
96
L
GPC:
V
102
I
GPC:
V
103
I
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RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
T
163
V
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
V
214
I
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
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