This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q0MA.1

South_Africa/LOC_000Q0MA.1
J. Chamberlain, N. Cook, G. Lloyd, V. Mioulet, H. Tolley & R. Hewson

Centre for Emergency Preparedness and Response, Health Protection Agency Porton Down, Novel & Dangerous Pathogens

Sample details

Earliest release date
2005-11-23
Sampling location
South Africa
Isolate name
SPU128/81/7

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2005-11-23
INSDC accession L

Submission details

Submission ID
DQ076414.1.L
Submitting group
Date submitted
2026-09-07 16:14:49 UTC
Date released
2026-09-07 16:15:29 UTC

Files

Annotations

Alignment and QC

Total SNPs L
836
Total inserted nucs L
1
Total deleted nucs L
7
Total frame shifts L
3
Frame shifts L
RdRp:220-226(nt:734-754),RdRp:1030-1037(nt:3164-3187),RdRp:2217-2233(nt:6724-6775)
Length L
11832 (97.8%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G93A
  • C100T
  • T118C
  • T157C
  • T160C
  • T163C
  • T202C
  • T229C
  • C232T
  • A233G
  • T254A
  • A283G
  • A287G
  • C313A
  • G315A
  • C331T
  • C332T
  • T340C
Deletions

L

755, 3163, 3176, 3188, 6722, 6723, 6776
Insertions

L

ins_733:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:K53E
  • RdRp:Y60N
  • RdRp:K71E
  • RdRp:R80K
  • RdRp:T165K
  • RdRp:A202T
  • RdRp:N206Y
  • RdRp:K492R
  • RdRp:F495Y
  • RdRp:I505T
  • RdRp:R764K
  • RdRp:L765P
  • RdRp:T767A
  • RdRp:R770K
  • RdRp:P774L
  • RdRp:N779S
  • RdRp:I783T
Deletions

RdRp

RdRp:227, RdRp:1038, RdRp:2216, RdRp:2234
Insertions
N/A

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