This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q0MA.1

India/LOC_000Q0MA.1/2019
P. Yadav, A. Shete-Aich, D. Nyayanit & R. Sahay

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date
2019
Earliest release date
2021-08-07
Sampling location
India (Gujarat State, Anand)
Isolate name
MCL-19-H-3460

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-08 11:34insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2021-08-07
INSDC accession L segment

Host

Host

Submission details

Submission ID
MW298537.1.L
Submitting group
Date submitted
2026-06-08 11:34:19 UTC
Date released
2026-06-08 11:39:06 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
1686
Total inserted nucs L segment
47
Total deleted nucs L segment
5
Length L segment
12141 (99.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • T10C
  • G23T
  • A35G
  • G43C
  • C63A
  • C64T
  • T65C
  • T66A
  • G69A
  • G71T
  • C85T
  • G88A
  • G93A
  • A109G
  • A124G
  • T131A
  • C133T
  • G142A
Deletions

L segment

11964, 11981, 11982, 12076, 12077
Insertions

L segment

ins_58:T, ins_11931:AT, ins_12053:CTACAATTCTCTCAACC, ins_12108:TTTATTAATTCCAGGGTGTGGGGAACG

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:N24S
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:N206Y
  • RdRp:Q226H
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:K288R
Deletions
N/A
Insertions
N/A

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