This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q0MA.1

Nigeria/LOC_000Q0MA.1
J. Chamberlain, N. Cook, G. Lloyd, V. Mioulet, H. Tolley & R. Hewson

Centre for Emergency Preparedness and Response, Health Protection Agency, Novel & Dangerous Pathogens

Sample details

Earliest release date
2005-11-23
Sampling location
Nigeria
Isolate name
IbAr10200

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2005-11-23
INSDC accession L segment

Submission details

Submission ID
AY947891.1.L
Submitting group
Date submitted
2026-10-13 10:58:14 UTC
Date released
2026-10-13 11:00:00 UTC

Clade & Lineage

Closest reference L segment
singleReference

Files

Annotations

Alignment and QC

Total SNPs L segment
18
Total inserted nucs L segment
52
Length L segment
12160 (100%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • T10C
  • C1495T
  • A1879G
  • G3216A
  • C4117A
  • C5054A
  • T5065A
  • C5100A
  • C5798T
  • A5830T
  • T5875C
  • G8896A
  • G9764A
  • A12099T
  • T12100C
  • C12101A
  • G12105C
  • A12108C
Deletions
N/A
Insertions

L segment

ins_12108:TTCATCATCATCGTTATTATCTTGGGGTGTGGGGGGAACGATTTCTTTGAGA

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:G1047E
  • RdRp:P1660T
  • RdRp:T1675N
  • RdRp:V3230I
Deletions
N/A
Insertions
N/A

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