This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q0MA.1

Turkey/LOC_000Q0MA.1/2020-10
K. Ergunay, E. Dincer, S. A. Justi, B. P. Bourke, S. P. Nelson, H. M. Liao, M. O. Timurkan, B. Oguz, I. Sahindokuyucu, O. F. Gokcecik, D. D. Reinbold-Wasson, L. Jiang, N. L. Achee, J. P. Grieco, Y. M. Linton & Y.-M. Linton

Hacettepe University Faculty of Medicine, Department of Medical Microbiology Virology Unit

Sample details

Collection date
2020-10
Earliest release date
2023-05-31
Sampling location
Turkey
Isolate name
p58-37

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-20 13:49insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-05-31
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment
BioProject accession
BioSample accession
Raw reads accession

Host

Host

Submission details

Submission ID
OP432043.1.L/OP432044.1.M/OP432045.1.S
Submitting group
Date submitted
2026-04-20 13:49:12 UTC
Date released
2026-04-20 13:56:04 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (OR047158.1) (variant)
Closest reference S segment
S11 (MK299338.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
2693
Total inserted nucs L segment
34
Total deleted nucs L segment
8
Length L segment
12119 (99.9%)
Total SNPs M segment
1236
Total inserted nucs M segment
37
Length M segment
4762 (87.5%)
Total SNPs S segment
72
Length S segment
1573 (93.6%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, OR047158.1 & MK299338.1 references

Substitutions

L segment

  • C17A
  • C18T
  • C21A
  • G23A
  • A26G
  • C27T
  • C29A
  • A30C
  • C31T
  • T33G
  • A35G
  • C39T
  • G43T
  • T47A
  • T58C
  • T62G
  • C63A
  • T65C

M segment

  • A666C
  • A671G
  • A673C
  • G674A
  • A679C
  • A680G
  • G684C
  • A688C
  • G689A
  • T696C
  • A697C
  • G701A
  • C702T
  • A708C
  • T711C
  • C712A
  • A713T
  • A715C

S segment

  • A31G
  • A84G
  • G174A
  • A177G
  • T216C
  • C234T
  • A247T
  • A270G
  • T303C
  • T309C
  • A315C
  • C342T
  • A348G
  • C369T
  • C384T
  • A393G
  • T426C
  • C444T
Deletions

L segment

48-55
Insertions

L segment

ins_11969:CCCAGCAT, ins_12015:GCGTCGTGATCAAT, ins_12054:TCACTCTGCCT, ins_12108:G

M segment

ins_718:GCAGGCAGTGGTCCA, ins_5200:ATCTGTACGAAACAGT, ins_5273:CTGCTG

Amino acid substitutions

Substitutions called relative to the NC_005301.3, OR047158.1 & MK299338.1 references

Substitutions

GPC

  • GPC:T199A
  • GPC:A200T
  • GPC:N202D
  • GPC:S203T
  • GPC:A205T
  • GPC:I207T
  • GPC:A209I
  • GPC:N211T
  • GPC:I212T
  • GPC:T213S
  • GPC:S214P
  • GPC:H215A
  • GPC:N216G
  • GPC:I217S
  • GPC:S218G
  • GPC:I219P
  • GPC:T221S
  • GPC:S222T

NP

  • NP:T65S
  • NP:E161D

RdRp

  • RdRp:D2E
  • RdRp:I13L
  • RdRp:S19T
  • RdRp:N24S
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:L64I
  • RdRp:E66K
  • RdRp:S67T
  • RdRp:R70Q
  • RdRp:Q74L
  • RdRp:E75D
  • RdRp:R80K
  • RdRp:K91Q
  • RdRp:L94S
  • RdRp:A122T
  • RdRp:S124N
  • RdRp:D135E
Deletions
N/A
Insertions

GPC

ins_GPC:225:TKTSP

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