This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZWV.1

Brazil/SafiraMG/2018-07-11
E. A. Costa, M. Giovanetti, V. S. Fonseca, F. F. Aburjaile, J. Xavier, L. Catenacci, T. Adelino, F. C. M. Iani, W. Dumon, K. Deforche, J. Lourenco, T. De Oliveira & L. C. J. Alcantara

Fundacao Oswaldo Cruz, Laboratorio de Flavivirus

Sample details

Collection date
2018-07-11
Earliest release date
2022-05-08
Sampling location
Brazil (Minas Gerais)
Isolate name
SafiraMG

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-26 20:30insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-05-08
NCBI update date
2022-05-08
INSDC accession

Host

Host

Submission details

Submission ID
MW420989.1
Submitting group
Date submitted
2026-03-26 20:30:44 UTC
Date released
2026-03-26 20:58:59 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
10
Length
10795 (97.9%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:S334F
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159V
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T247C
  • A630G
  • C1465T
  • C4107T
  • G5280A
  • C5612T
  • T6405C
  • C7287T
  • T8235C
  • C10338T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:S334F

env

  • env:L167F
Deletions
N/A
Insertions
N/A

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