This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZWV.1

Display Name: Algeria/LOC_000PZWV.1/2023
K. E. Benallal, F. A. Khardine, A. N. Guessoum, I. Lafri & A. Haichid

Sample details

Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Earliest release date
2025-09-03
Collection country
Algeria
Collection subdivision level 1
Illizi
Isolate name
Nairo RD22

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-21 14:22insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institut Pasteur of Algeria, Virology

INSDC

NCBI release date
2025-09-03
INSDC accession S

Host

Host taxon id
Host name scientific
Camelus

Alignment and QC metrics S

Length S
465
Total SNPs S
80
Total inserted nucs S
1
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
27.75%
Total stop codons S
0

Submission details

Submission ID
PQ246052.1.S
Submitting group
Date submitted
2025-11-21 14:22:17 UTC
Date released
2025-11-21 14:30:10 UTC

Lineage

Segment S Lineage
I

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C38A
  • S:T39C
  • S:T46C
  • S:A53G
  • S:G54A
  • S:A61G
  • S:G67A
  • S:C70T
  • S:G73A
  • S:T79C
  • S:A92C
  • S:G94T
  • S:G99A
  • S:G100A
  • S:A109G
  • S:A118G
  • S:T127C
  • S:A130G
    • Deletions
    None
    Insertions
    ins_S:0:T

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:M13L
  • NP:R15K
  • NP:S39N
  • NP:S52G
  • NP:F73Y
  • NP:K91R
  • NP:A100T
  • NP:T124A
  • NP:G125N
    • Deletions
    None
    Insertions
    None

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