This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZQ7.1

LOC_000PZQ7.1
J. Ji, H. Zhou, M. Cui, M. Guo, Z. Ma, L. Li, T. Hu & W. Shi

Shandong First Medical University and Shandong Academy of Medical Sciences, Key Laboratory of Etiology and Epidemiology of Emerging Infectious Diseases

Sample details

Earliest release date
2022-12-30
Isolate name
JMN01/CCHFV/CHINA/2021

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-20 13:49insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-12-30
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Host

Host

Submission details

Submission ID
ON500502.1.L/ON500501.1.M/ON500500.1.S
Submitting group
Date submitted
2026-04-20 13:49:12 UTC
Date released
2026-04-20 13:56:04 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
252
Total inserted nucs S segment
6
Total deleted nucs S segment
9
Length S segment
1717 (95.2%)
Total SNPs L segment
1568
Total inserted nucs L segment
24
Length L segment
12123 (99.9%)
Total SNPs M segment
1034
Total inserted nucs M segment
1
Length M segment
5341 (97.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • T10C
  • G23T
  • G32A
  • A35G
  • A42G
  • G43C
  • T49C
  • A53G
  • C59T
  • C63T
  • G71T
  • G93A
  • T106C
  • A109G
  • G112A
  • T131A
  • C136T
  • T139C

M segment

  • G46T
  • A47G
  • G52A
  • A53C
  • G65A
  • A66G
  • T67A
  • A76G
  • T78C
  • T79C
  • G80T
  • C88T
  • C92T
  • T94C
  • T96C
  • T98C
  • G103A
  • A104T

S segment

  • T16A
  • C31G
  • T32C
  • G34A
  • A45G
  • C48T
  • A84G
  • A98T
  • A102G
  • C126T
  • T141C
  • C150T
  • A164T
  • T166C
  • C183T
  • A186G
  • T204C
  • T234A
Deletions

S segment

1684-1692
Insertions

L segment

ins_11932:TT, ins_12058:A, ins_12108:AGGGTGTGGGGGGAACGATTT

M segment

ins_5165:A

S segment

ins_1524:TT, ins_1652:AAGC

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:H2Y
  • GPC:I3T
  • GPC:S4P
  • GPC:M6L
  • GPC:Y7C
  • GPC:F10L
  • GPC:Q13K
  • GPC:C15W
  • GPC:G16S
  • GPC:L17S
  • GPC:G18E
  • GPC:K19G
  • GPC:N21H
  • GPC:P23L
  • GPC:H24S
  • GPC:G26E
  • GPC:E28Q
  • GPC:N30S

NP

  • NP:Y20F
  • NP:N42I
  • NP:D116E
  • NP:N125D
  • NP:Q128R
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:G245E
  • NP:R270K
  • NP:S275N
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:I45V
  • RdRp:N52D
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:K91E
  • RdRp:G113D
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K237R
Deletions
N/A
Insertions
N/A

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