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LOC_000PZQ7.1
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Download FASTA
Download metadata TSV
Display Name: North_Macedonia/LOC_000PZQ7.1/2023
G. Bosevska,
P. Emmerich,
R. von Possel,
E. G. Toth,
D. Osmani &
D. Cadar
Sample details
Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Earliest release date
2024-07-06
Collection country
North Macedonia
Isolate name
Kuchica-2713
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-11-10 19:02
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Bernhard Nocht Institute for Tropical Medicine, Virus Genomics and Evolution
INSDC
NCBI release date
2024-07-06
INSDC accession L
PP963968.1
INSDC accession M
PP963969.1
INSDC accession S
PP963970.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12347
Total SNPs L
1298
Total inserted nucs L
239
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
100.00%
Alignment and QC metrics M
Length M
5388
Total SNPs M
1066
Total inserted nucs M
25
Total deleted nucs M
3
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
100.00%
Alignment and QC metrics S
Length S
1814
Total SNPs S
267
Total inserted nucs S
142
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
100.00%
Submission details
Submission ID
PP963968.1.L/PP963969.1.M/PP963970.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-11-10 19:02:11 UTC
Date released
2025-11-10 19:08:24 UTC
Lineage
Segment S Lineage
V
Files
Annotations
LOC_000PZQ7.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
10
C
L:
A
35
G
L:
A
42
T
L:
G
43
C
L:
T
49
C
L:
A
53
G
L:
C
59
T
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
67
C
L:
A
72
G
L:
A
73
T
L:
A
91
G
L:
G
93
A
L:
C
100
T
L:
A
109
G
L:
T
131
A
Show more
M
M:
C
2
A
M:
T
3
G
M:
A
5
G
M:
A
7
C
M:
G
8
C
M:
A
9
T
M:
A
10
C
M:
A
11
C
M:
T
12
A
M:
A
13
C
M:
T
40
C
M:
G
50
A
M:
A
51
G
M:
A
61
T
M:
T
67
C
M:
T
68
C
M:
T
71
A
M:
G
76
C
Show more
S
S:
T
1
C
S:
C
2
A
S:
A
5
T
S:
A
7
G
S:
G
8
C
S:
A
9
G
S:
A
11
C
S:
A
13
T
S:
T
16
A
S:
G
17
C
S:
C
19
A
S:
G
20
T
S:
T
23
A
S:
A
24
G
S:
C
27
A
S:
T
49
C
S:
A
50
T
S:
G
54
A
Show more
Deletions
M:333-335
Insertions
ins_L:0:GACCATCTAGCGACCTCCACTTCAGTCACTGGCTGCAACAGTCCAAATGATTATTGTAATGCCCATTTCTTTGGCTAGCATGGATG, ins_L:25:T, ins_L:57:AT, ins_L:11928:CG, ins_L:12092:CTATTCATACCAGTTTTATTATTTGAAGGGTATGGGGGG, ins_L:12108:AATGCAGAGCAGCTAGCTCGTTTGAGAGCTTTGATGCTGGCAACTACTATGGTATAGACTGTCTCGTTTGCCCTTGGGACATTGAAAGACAGTGGAGGTCGCTAGATGG, ins_M:0:CATC, ins_M:5171:T, ins_M:5366:GTGGAGGTCGCTAGATGGTC, ins_S:0:GAC,...
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Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
P
GPC:
E
26
A
GPC:
R
28
E
GPC:
K
31
G
GPC:
T
32
A
GPC:
D
33
N
GPC:
M
35
T
GPC:
T
37
A
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
Show more
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
I
131
M
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
N
390
S
Show more
Deletions
GPC:77
Insertions
None
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