This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZMD.1

Display Name: Pakistan/LOC_000PZMD.1/2021
S. M. Chohan, N. Jamil, W. H. Naqvi & S. Khan

Sample details

Collection date
2021
Collection date (lower bound)
2021-01-01
Collection date (upper bound)
2021-12-31
Earliest release date
2024-05-23
Collection country
Pakistan
Isolate name
CCHFV-T38-2021-2

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-01 16:21insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centers of Excellence in Sciences and Applied Technology, Molecular Biology Division

INSDC

NCBI release date
2024-05-23
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics S

Length S
477
Total SNPs S
53
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
28.53%
Total stop codons S
0

Submission details

Submission ID
PP801029.1.S
Submitting group
Date submitted
2025-12-01 16:21:34 UTC
Date released
2025-12-01 16:27:40 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G1033T
  • S:G1036C
  • S:C1048T
  • S:C1055T
  • S:A1063G
  • S:A1072G
  • S:T1096A
  • S:T1099C
  • S:C1100T
  • S:C1141T
  • S:T1144C
  • S:C1147T
  • S:T1174C
  • S:T1183C
  • S:C1189T
  • S:T1195G
  • S:T1204C
  • S:A1222T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:T394A
  • NP:Q405L
  • NP:K428R
  • NP:V436I
    • Deletions
    None
    Insertions
    None

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