This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZMD.1

Display Name: Taiwan/LOC_000PZMD.1/2000
D. Cheng, Y.-W. Chiu, S.-W. Huang, Y.-Y. Lien, C.-L. Chang, H.-P. Tsai, Y.-F. Wang & J.-R. Wang

Sample details

Collection date
2000
Collection date (lower bound)
2000-01-01
Collection date (upper bound)
2000-12-31
Earliest release date
2022-11-02
Collection country
Taiwan
Isolate name
N3771TW00

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-27 07:37insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
College of Medicine, National Cheng Kung University, Department of Medical Laboratory Science and Biotechnology

INSDC

NCBI release date
2022-11-02

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
880
Total SNPs
211
Total inserted nucs
0
Total deleted nucs
3120
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
53.96%

Submission details

Submission ID
OP562205.1.CV-A16
Submitting group
Date submitted
2025-11-27 07:37:01 UTC
Date released
2025-11-27 08:26:24 UTC

Clade

Clade CV-A16
B

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2448G
  • G2452C
  • G2453C
  • A2454C
  • C2463T
  • T2469C
  • G2475A
  • G2476A
  • T2478C
  • C2481G
  • C2483A
  • T2484C
  • T2485A
  • C2486A
  • C2487T
  • G2489A
  • T2493A
  • G2494A
    • Deletions
    3318-6437
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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