This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZKH.1

Austria/LOC_000PZKH.1/2018-08-16
K. Bakran-Lebl, J. Camp, J. Kolodziejek, P. Weidinger, P. Hufnagl, A. C. Rosel, A. Zwickelstorfer, F. Allerberger, N. Nowotny & A. Cabal Rosel

University of Veterinary Medicine Vienna, Pathobiology, Institute of Virology

Sample details

Collection date
2018-08-16
Earliest release date
2021-07-07
Sampling location
Austria (Vienna International Airport)
Isolate name
AT-187/18

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-26 20:30insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2021-07-07
NCBI update date
2021-07-07
INSDC accession

Host

Host

Submission details

Submission ID
MW160846.1
Submitting group
Date submitted
2026-03-26 20:30:44 UTC
Date released
2026-03-26 20:57:57 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
120
Total inserted nucs
29
Total deleted nucs
11
Length
830 (7.36%)
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A10149T
  • A10161G
  • C10179A
  • G10185T
  • A10190G
  • A10191G
  • C10200T
  • C10203T
  • T10209C
  • A10212T
  • A10218G
  • C10219A
  • G10224A
  • C10230T
  • C10242T
  • C10243T
  • A10255C
  • G10258A
Deletions

10421, 10487-10494, 10904, 10921
Insertions

ins_10408:TGTATTGAGT, ins_10417:GTTGTAGTGTTTA, ins_10427:G, ins_10462:A, ins_10483:GTT, ins_10501:T

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS5

  • NS5:K837R
  • NS5:A860T
  • NS5:Q869H
  • NS5:A877S
  • NS5:I878V
  • NS5:D881E
  • NS5:K892R
  • NS5:T898I
  • NS5:L899V
Deletions
N/A
Insertions
N/A

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