This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
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Test organism (with files)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000PEMY.1
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Display Name: India/LOC_000PEMY.1/2019
P. Yadav,
A. Shete-Aich,
D. Nyayanit &
R. Sahay
Sample details
Collection date
2019
Collection date (lower bound)
2019-01-01
Collection date (upper bound)
2019-12-31
Earliest release date
2021-08-07
Collection country
India
Collection subdivision level 1
Gujarat State, Rajkot
Isolate name
MCL-19-H-3173
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-16 07:30
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Institute of Virology, Maximum Containment Laboratory
INSDC
NCBI release date
2021-08-07
INSDC accession L
MW298539.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12149
Total SNPs L
1623
Total inserted nucs L
50
Total deleted nucs L
8
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.99%
Submission details
Submission ID
MW298539.1.L
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-16 07:29:57 UTC
Date released
2025-09-16 07:34:13 UTC
Files
Annotations
LOC_000PEMY.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
10
C
L:
G
23
T
L:
A
35
G
L:
G
43
T
L:
T
49
C
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
66
C
L:
T
68
C
L:
G
69
A
L:
G
71
C
L:
C
85
T
L:
G
88
A
L:
G
93
A
L:
A
109
G
L:
C
117
A
L:
A
124
G
Show more
Deletions
L:11920-11924, L:11981, L:11982, L:12072
Insertions
ins_L:58:T, ins_L:11917:CATTATC, ins_L:11973:A, ins_L:11977:A, ins_L:12058:ATTC, ins_L:12078:CTTACT, ins_L:12083:ACTATTC, ins_L:12098:TCATGTCCGTTTTATT, ins_L:12108:TGTGGGG
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
Show more
Deletions
None
Insertions
None
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