This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

Display Name: Sudan/LOC_000PEMY.1
K. S. Richards, C. B. Bruce, R. Hewson, E. N. C. Newman, L. Easterbrook, J. L. M. Plank, N. Cook, V. Mioulet, H. Tolley, N. Silman, M. Stubbington, J. Mason & G. Lloyd

Submission details

Submission ID
FJ968794.1
Date submitted
2025-07-11 19:15:27 UTC
Date released
2025-07-11 19:15:51 UTC

Data use terms

Data use terms
OPEN
Data use terms URL

Authors

Author affiliations
Health Protection Agency, Centre for Emergency Preparedness & Response

Alignment and QC metrics

Completeness
100.00%
Length
18875
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
952
Total unknown nucs
0

Sample details

Earliest release date
2009-05-27
Collection country
Sudan
Collection date (upper bound)
2009-05-27

INSDC

INSDC accession
NCBI release date
2009-05-27
NCBI update date
2009-05-29

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • T30A
  • T32G
  • C34T
  • A96G
  • C146T
  • A181G
  • T205G
  • G244T
  • A258G
  • T264A
  • T279A
  • C282T
  • A292G
  • A310G
  • A314G
  • T323C
  • C330T
  • T331C
  • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002549.1 reference

    Substitutions

    GP

  • GP:G2E
  • GP:V97F
  • GP:D237N
  • GP:R243L
  • GP:R272K
  • GP:A310T
  • GP:A322T
  • GP:I326T
  • GP:N346D
  • GP:P352S
  • GP:I355V
  • GP:G374D
  • GP:A385T
  • GP:H395N
  • GP:I403T
  • GP:R404G
  • GP:P405L
  • GP:P411L
  • L

  • L:K43R
  • L:T58A
  • L:V91A
  • L:A157S
  • L:N273D
  • L:F406S
  • L:I954V
  • L:K1061R
  • L:P1095S
  • L:K1105R
  • L:N1349D
  • L:D1383E
  • L:I1577V
  • L:S1585P
  • L:T1602I
  • L:G1616E
  • L:C1619G
  • L:N1656K
  • NP

  • NP:S47N
  • NP:E436D
  • NP:Q496R
  • NP:S505N
  • NP:H513Y
  • NP:P544S
  • NP:Q560H
  • NP:D577N
  • NP:V593G
  • NP:V596I
  • NP:G598E
  • NP:N601T
  • NP:N626S
  • NP:A627T
  • NP:G630S
  • NP:P642S
  • NP:E643K
  • NP:G645S
  • VP24

  • VP24:P233S
  • VP30

  • VP30:N12S
  • VP30:V71I
  • VP35

  • VP35:R5K
  • VP35:N38T
  • VP35:A43T
  • VP35:A77T
  • VP35:G98S
  • VP35:V100I
  • VP35:T101A
  • VP35:T102N
  • VP35:I190T
  • VP35:A275T
  • VP35:A324T
  • sGP

  • sGP:G2E
  • sGP:V97F
  • sGP:D237N
  • sGP:R243L
  • sGP:R272K
  • ssGP

  • ssGP:G2E
  • ssGP:V97F
  • ssGP:D237N
  • ssGP:R243L
  • ssGP:R272K
  • ssGP:S309N
  • Deletions
    None
    Insertions
    None

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