This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
West Nile Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Ebola Zaire
Test organism (without alignment)
West Nile Virus
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Status
LOC_000PEMY.1
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Display Name: Hungary/LOC_000PEMY.1/2023-01-01
A. Nagy,
K. Kerenyi
Submission details
Submission ID
PP197725.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-19 17:22:40 UTC
Date released
2024-09-19 17:29:06 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-09-19 17:22
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Center for Public Health and Pharmacy, National Reference Laboratory for Viral Zoonoses
Alignment states and QC metrics
Completeness
4.81%
Frame shifts
NS3:204-619(nt:5220-6468)
Length
423
Total ambiguous nucs
0
Total deleted nucs
107
Total frame shifts
1
Total inserted nucs
0
Total SNPs
85
Total stop codons
0
Total unknown nucs
0
Sample details
Collection subdivision level 1
Budapest
Collection country
Hungary
Collection date
2023-01-01
Isolate name
3919_NS3_WNV_Hungary_2023
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP197725.1
NCBI release date
2024-01-30
NCBI update date
2024-01-30
Lineage
Lineage
2
Nucleotide mutations
Substitutions
G
5112
A
T
5223
A
G
5226
T
A
5229
C
G
5232
A
A
5241
G
A
5250
C
G
5255
A
C
5260
T
A
5265
G
A
5268
G
C
5271
T
G
5274
A
A
5277
G
G
5280
A
A
5283
C
T
5292
C
G
5295
T
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Deletions
5113-5219
Insertions
None
Amino acid mutations
Substitutions
Deletions
NS3:168-203
Insertions
None
Load sequences