LOC_000PECH.1

Kazakhstan/LOC_000PECH.1

K. Abdiyeva, N. Turebekov, A. Dmitrovsky, N. Tukhanova, A. Shin, L. Yeraliyeva, N. Heinrich, M. Hoelscher, R. Yegemberdiyeva, Z. Shapiyeva, Z. Kachiyeva, A. Zhalmagambetova, J. Montag, G. Dobler, J. Zinner, E. Wagner, S. Frey & S. Essbauer

Bundeswehr Institute of Microbiology, Virology & Rickettsiology

Sample details

Earliest release date

2018-12-26

Sampling location

Kazakhstan (Kyzylorda)

Isolate name

Kyz43

Data use terms

Changed	User	Data use terms
2026-04-08 17:06	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2018-12-26

INSDC accession L

MG974104.1

INSDC accession S

MG974100.1

Submission details

Submission ID

MG974104.1.L/MG974100.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-04-08 17:06:06 UTC

Date released

2026-04-08 17:12:09 UTC

Host

Homo sapiens

Lineage

Segment S Lineage

IV.2

Files

Annotations

LOC_000PECH.1.embl

Alignment and QC

Total SNPs L

Length L

647 (5.34%)

Variant L

False

Total SNPs S

Length S

181 (10.8%)

Variant S

False

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

C2630T
C2633T
T2634G
A2635G
G2637C
A2639T
C2641T
G2644A
C2647T
C2653T
C2659T
A2665T
T2668C
A2674G
C2677T
G2704T
G2707A
G2716A

S

A1072G
T1096A
T1099C
C1100T
C1105T
C1108T
T1132C
C1147T
T1174C
C1189T
C1193T
T1195G
T1201C
T1204C
A1216G
A1222T
G1234A

Deletions

N/A

Insertions

N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references