This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDUK.1

Display Name: LOC_000PDUK.1
P. McMinn, K. Lindsay, D. Perera, H. M. Chan, K. P. Chan, M. J. Cardosa & P. C. McMinn

Sample details

Collection date (upper bound)
2001-08-19
Earliest release date
2001-08-19

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-11 21:31insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
TVW Telethon Institute for Child Health Research, Division of Virology

INSDC

NCBI release date
2001-08-19
NCBI update date
2016-07-23
INSDC accession

Alignment and QC metrics

Length
891
Total SNPs
162
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
12.03%
Total stop codons
0

Submission details

Submission ID
AF376090.1
Submitting group
Date submitted
2025-12-11 21:31:06 UTC
Date released
2025-12-11 21:33:23 UTC

Clade

Clade EV-A71
B3

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G2441A
  • C2444T
  • A2447G
  • T2462C
  • A2491G
  • G2492A
  • C2495A
  • C2498T
  • C2503A
  • A2504G
  • T2507C
  • T2508C
  • A2510G
  • T2513A
  • C2525T
  • C2527A
  • G2529A
  • C2534A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP1

  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N
  • VP1:K43E
  • VP1:A58T
  • VP1:K98E
  • VP1:R145G
  • VP1:D164E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S184T
  • VP1:T237N
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
    • Deletions
    None
    Insertions
    None

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