This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDUK.1

Iran/LOC_000PDUK.1/2015
N. Shahhosseini & S. Chinikar

Bernhard Nocht Institute for Tropical Medicine

Sample details

Collection date
2015
Earliest release date
2017-02-28
Sampling location
Iran
Isolate name
CJH

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2017-02-28
INSDC accession S

Host

Host

Submission details

Submission ID
KU707899.1.S
Submitting group
Date submitted
2026-08-07 11:59:41 UTC
Date released
2026-08-07 12:03:06 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Alignment and QC

Total SNPs S
201
Length S
1553 (92.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • A50G
  • G54A
  • G67A
  • T79A
  • G86C
  • T93A
  • G99A
  • A109G
  • A118G
  • C142T
  • C166T
  • G169A
  • G171A
  • T172C
  • C178A
  • T182C
  • G190A
  • T199C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:N8K
  • NP:D11H
  • NP:M13K
  • NP:R15K
  • NP:S39N
  • NP:S52G
  • NP:V83A
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:V141G
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S301G
  • NP:A307V
  • NP:Q405L
  • NP:V436I
Deletions
N/A
Insertions
N/A

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