This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDRR.1

USA/LOC_000PDRR.1/2010-07-29
N. Grubaugh, Y. Fang, N. L. Matteson, K. Gangavarapu, L. Coffey, C. Barker & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2010-07-29
Earliest release date
2019-01-20
Sampling location
USA (Roseville,California)
Isolate name
WNV/bird/Roseville_CA_USA/2010-07-29/W137

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-18 12:55insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
MH507719.1
Submitting group
Date submitted
2026-03-18 12:54:31 UTC
Date released
2026-03-18 13:10:32 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
79
Total unknown nucs
695
Length
10302 (87.1%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS1:Q146R
  • NS2B:A103V
  • NS3:T249P
  • NS3:S334F
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:I35L
  • prM:H86Y
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A568C
  • A630G
  • C660T
  • C721T
  • A1020C
  • T1182C
  • T1221C
  • G1419A
  • T1442C
  • C1465T
  • T1650A
  • G2031A
  • C2175T
  • T2374C
  • C2466T
  • A2826G
  • A2906G
  • C2913T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS1

  • NS1:Q146R

NS3

  • NS3:S334F

env

  • env:V159A
  • env:L167F

prM

  • prM:I35L
  • prM:H86Y
Deletions
N/A
Insertions
N/A

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