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LOC_000PDQT.1
Download
Download FASTA
Download metadata TSV
Sudan/LOC_000PDQT.1/2008-10
I. E. Aradaib,
B. R. Erickson,
M. S. Karsany,
M. L. Khristova,
R. M. Elageb,
M. E. Mohamed &
S. T. Nichol
Centers for Disease Control and Prevention, Special Pathogens Branch
Sample details
Collection date
2008-10
Earliest release date
2011-06-28
Sampling location
Sudan (Al-Fulah City, Western Kordufan Province)
Isolate name
Sudan Al-Fulah 9-2008
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2011-06-28
INSDC accession L
HQ378182.1
INSDC accession M
HQ378185.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
HQ378182.1.L/HQ378185.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-11 12:57:02 UTC
Date released
2026-09-11 12:58:59 UTC
Files
Annotations
LOC_000PDQT.1.embl
Alignment and QC
Total SNPs L
914
Total inserted nucs L
62
Length L
12170 (100%)
Total SNPs M
302
Total deleted nucs M
1
Length M
5357 (99.9%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
A
A
35
G
A
38
T
T
49
C
A
50
G
T
55
C
G
56
A
T
62
A
C
63
G
C
64
T
T
65
C
T
70
C
A
74
G
G
93
A
T
121
C
T
160
C
T
163
C
G
166
A
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M
T
65
C
C
82
T
T
86
C
A
117
G
G
143
A
G
156
A
A
174
G
G
175
T
C
193
T
C
194
T
A
195
G
A
203
G
G
207
A
A
213
G
C
217
T
C
221
T
C
229
A
C
232
T
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Deletions
M
5170
Insertions
L
ins_11925:GC, ins_12073:TGCTAATCCT, ins_12108:ATCATCATCATTATTATTATTTTGGGGTGTGGGGGGAACGATTTCTTTGA
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
9
V
GPC:
G
22
R
GPC:
R
28
V
GPC:
T
34
I
GPC:
M
35
V
GPC:
G
39
S
GPC:
N
41
D
GPC:
P
42
L
GPC:
P
46
Q
GPC:
P
47
L
GPC:
L
56
P
GPC:
P
66
S
GPC:
P
80
S
GPC:
G
85
E
GPC:
P
88
S
GPC:
L
89
Q
GPC:
S
90
P
GPC:
E
95
K
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RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
A
202
T
RdRp:
N
206
H
RdRp:
D
264
E
RdRp:
I
505
T
RdRp:
G
763
E
RdRp:
R
764
K
RdRp:
T
767
A
RdRp:
R
770
K
RdRp:
P
774
L
RdRp:
N
779
S
RdRp:
Q
780
K
RdRp:
I
783
T
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
S
957
G
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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