This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDGA.1

Iran/LOC_000PDGA.1/2015
N. Shahhosseini & S. Chinikar

Bernhard Nocht Institute for Tropical Medicine

Sample details

Collection date
2015
Earliest release date
2016-09-03
Sampling location
Iran
Isolate name
Noshahr-59

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-09-03
INSDC accession S

Host

Host

Submission details

Submission ID
KT588642.1.S
Submitting group
Date submitted
2026-09-22 19:02:30 UTC
Date released
2026-09-22 19:06:19 UTC

Lineage

Segment S Lineage
V

Files

Annotations

Alignment and QC

Total SNPs S
56
Length S
348 (20.8%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • C166T
  • G171A
  • T175A
  • C178A
  • T182C
  • C187T
  • G189A
  • T199C
  • T211C
  • C217T
  • C235T
  • C244T
  • G262A
  • A268C
  • T274C
  • T283C
  • G292A
  • C295T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
Deletions
N/A
Insertions
N/A

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