This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PDGA.1

Netherlands/LOC_000PDGA.1/2023
A. Hirvonen, C. K. Johannesen, P. Simmonds, T. K. Fischer, H. Harvala, K. S. M. Benschop, J. Cremer & K. Benschop

National Institute for Public Health and the Environment, Centre for Infectious Disease Research, Diagnostics and Screening

Sample details

Collection date
2023
Earliest release date
2025-05-01
Sampling location
Netherlands
Isolate name
NL06-23-17

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-24 19:28insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-05-01
NCBI update date
2025-05-01
INSDC accession

Host

Host

Submission details

Submission ID
PQ596501.1
Submitting group
Date submitted
2026-02-24 19:28:12 UTC
Date released
2026-02-24 19:42:56 UTC

Clade

Clade EV-D68
B3

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
63
Length
344 (4.67%)

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • T2526G
  • C2529T
  • C2550T
  • A2568G
  • G2577A
  • T2580C
  • G2586A
  • G2589C
  • G2592A
  • G2595T
  • T2596C
  • G2604A
  • T2613C
  • G2614A
  • G2619A
  • C2625T
  • C2626T
  • A2628G
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the AY426531.1 reference

    Substitutions

    VP1

  • VP1:G76S
  • VP1:K84R
  • VP1:N90D
  • VP1:A92T
  • VP1:S95T
  • VP1:G97Q
  • VP1:H99D
  • VP1:K110R
  • VP1:N142S
  • VP1:D144N
  • VP1:S145N
  • VP1:M148V
    • Deletions
    N/A
    Insertions
    N/A

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