This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PCK4.1

India/LOC_000PCK4.1/2015
P. D. Yadav, D. Y. Patil, A. M. Shete, P. Kokate, P. Goyal, S. Jadhav, S. Sinha, D. Zawar, S. K. Sharma, A. Kapil, D. K. Sharma, K. J. Upadhyay & D. T. Mourya

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date
2015
Earliest release date
2016-11-25
Sampling location
India
Isolate name
NIV151149

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-11-25
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
KT384384.1.L/KT384403.1.M/KT384401.1.S
Submitting group
Date submitted
2026-08-07 11:59:41 UTC
Date released
2026-08-07 12:03:06 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Alignment and QC

Total SNPs M
69
Length M
821 (15.3%)
Total SNPs S
168
Length S
1449 (86.7%)
Total SNPs L
674
Total deleted nucs L
1612
Total frame shifts L
1
Frame shifts L
RdRp:1252-3946(nt:3828-11914)
Length L
5233 (56.5%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • C415T
  • A416G
  • T442A
  • C445T
  • T466C
  • C475T
  • C481T
  • T499C
  • T509C
  • A523G
  • G538T
  • T550G
  • G553A
  • G556A
  • A563G
  • A565T
  • A574G
  • G578A

M

  • C4043T
  • A4046G
  • T4067C
  • T4068C
  • T4082C
  • A4084G
  • G4085A
  • T4091C
  • A4100G
  • C4117A
  • C4130A
  • C4142T
  • C4172T
  • T4184C
  • T4193C
  • C4202T
  • A4205C
  • G4208A

S

  • G67A
  • T79C
  • A81G
  • G99A
  • A109G
  • A118G
  • C166T
  • G169A
  • T172C
  • C178A
  • T182C
  • G190A
  • G196A
  • T199C
  • C208T
  • C217T
  • G229A
  • C235T
Deletions

L

2216-3827
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:K1331R
  • GPC:P1342Q
  • GPC:N1394T
  • GPC:A1451T
  • GPC:H1527Y
  • GPC:E1533K
  • GPC:K1537Q
  • GPC:S1564N

NP

  • NP:N9S
  • NP:R15K
  • NP:V83A
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:K286N
  • NP:S301G
  • NP:A307V
  • NP:E322D
  • NP:Q405L
  • NP:K428R
  • NP:V436I

RdRp

  • RdRp:I114V
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:I223V
  • RdRp:N236S
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:R302K
  • RdRp:D499N
  • RdRp:I505T
  • RdRp:A508V
  • RdRp:N510S
  • RdRp:V700I
  • RdRp:R704K
Deletions

RdRp

RdRp:714-1251
Insertions
N/A

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