This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PCK4.1

Kazakhstan/LOC_000PCK4.1/2015
P. Deryabin, B. Atshabar, Y. Sansyzbaev, V. Berezin, T. Nurmakhanov, O. Yeskhojayev, A. Vilkova, A. Shevtsov, R. Hewson & B. Atkinson

Public Health England, Research

Sample details

Collection date
2015
Earliest release date
2016-07-03
Sampling location
Kazakhstan (Sairam district)
Isolate name
Kazakhstan 130

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 06:41insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2016-07-03
INSDC accession L segment

Host

Host

Submission details

Submission ID
KX129733.1.L
Submitting group
Date submitted
2026-05-09 06:41:32 UTC
Date released
2026-05-09 06:45:51 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
86
Total ambiguous nucs L segment
5
Length L segment
584 (4.78%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • T499A
  • T517C
  • G538T
  • T550G
  • G553A
  • A562G
  • A563G
  • A565T
  • A576G
  • G577A
  • G578A
  • G583A
  • C586T
  • A590G
  • G592A
  • G597A
  • T601C
  • T613C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:T163A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:I267V
  • RdRp:K275R
  • RdRp:I279V
Deletions
N/A
Insertions
N/A

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