This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PCH8.1

USA/LOC_000PCH8.1/2014-08-08
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2014-08-08
Earliest release date
2025-09-02
Sampling location
USA (Nebraska; Dawson)
Isolate name
UNMC0197

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-25 21:18insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-02
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ310006.1
Submitting group
Date submitted
2026-02-25 21:17:49 UTC
Date released
2026-02-25 21:39:59 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
80
Length
10296 (93.4%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C204T
  • C340T
  • A407G
  • C435T
  • A630G
  • C969T
  • C1065T
  • C1170T
  • T1442C
  • C1465T
  • G1662A
  • C1707T
  • C1750T
  • G1876A
  • T1890C
  • C2304T
  • C2466T
  • T2898C
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:R205K
  • NS1:I236V
  • NS1:S288R

    • NS2A

  • NS2A:R188K

    • NS2B

  • NS2B:V120I

    • NS4B

  • NS4B:F119L

    • NS5

  • NS5:V49I
  • NS5:K314R
  • NS5:A547S

    • capsid

  • capsid:K104R

    • env

  • env:V159A
  • env:L167F
  • env:V304I
    • Deletions
    N/A
    Insertions
    N/A

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