This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PCH8.1

USA/UNMC0721/2023-09-06
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2023-09-06
Earliest release date
2025-09-02
Sampling location
USA (Nebraska; Hall)
Isolate name
UNMC0721

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-09 12:53insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-02
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ309992.1
Submitting group
Date submitted
2026-03-09 12:53:36 UTC
Date released
2026-03-09 13:10:35 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
100
Length
10260 (93%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:V88I
  • NS1:K102R
  • NS2A:T52I
  • NS2A:L95F
  • NS2A:H119Y
  • NS2B:A103V
  • NS3:T249P
  • NS3:S334T
  • NS3:I356T
  • NS4A:V85A
  • NS4B:S14I
  • NS4B:T48A
  • NS5:K177R
  • NS5:R422K
  • NS5:P431L
  • NS5:D881N
  • env:K93R
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C445T
  • A630G
  • C870T
  • T914C
  • A921G
  • C1285T
  • T1368C
  • A1401G
  • T1442C
  • C1465T
  • A1683G
  • T1939C
  • T1965C
  • A2097C
  • T2226C
  • C2371T
  • C2466T
  • C2593T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:V88I
  • NS1:K102R

NS2A

  • NS2A:T52I
  • NS2A:L95F
  • NS2A:H119Y

NS3

  • NS3:S334T

NS4B

  • NS4B:S14I
  • NS4B:T48A

NS5

  • NS5:R422K
  • NS5:P431L
  • NS5:D881N

env

  • env:V159A
  • env:L167F

prM

  • prM:M150T
Deletions
N/A
Insertions
N/A

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