This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PCH8.1

Display Name: France/LOC_000PCH8.1/2017-01-01
M. Bisseux, A. Mirand, C. Henquell & J.-L. Bailly

Sample details

Collection date
2017-01-01
Collection date (lower bound)
2017-01-01
Collection date (upper bound)
2017-01-01
Earliest release date
2025-04-12
Collection country
France
Isolate name
S1_3170520051_C1_TOU_FRA_01_01_2017

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-13 09:15insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centre National de Reference Enterovirus et Parechovirus - Chu Clermont Ferrand, Virologie

INSDC

NCBI release date
2025-04-12
NCBI update date
2025-04-12
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
307
Total SNPs
44
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
4.14%
Total stop codons
0

Submission details

Submission ID
PQ284362.1
Submitting group
Date submitted
2026-02-13 09:15:50 UTC
Date released
2026-02-13 09:30:35 UTC

Clade

Clade EV-A71
C1-like

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T2600A
  • G2603A
  • G2606A
  • T2618C
  • T2636A
  • T2648C
  • C2651T
  • T2657C
  • C2672T
  • C2675T
  • T2678C
  • C2690T
  • A2696G
  • C2702G
  • T2723C
  • A2730G
  • C2738A
  • C2741G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP1

  • VP1:K98E
  • VP1:R145E
    • Deletions
    None
    Insertions
    None

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