This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PCH8.1

Viet_Nam/LOC_000PCH8.1/2005
D. Perera, M. A. Yusof, Y. Podin, M. H. Ooi, N. T. Thao, K. K. Wong, A. Zaki, K. B. Chua, Y. A. Malik, P. V. Tu, N. T. Tien, P. Puthavathana, P. C. McMinn & M. J. Cardosa

Cardosa M.J., Universiti Malaysia Sarawak, Institute of Health & Community Medicine, Kota Samarahan, Sarawak, 94300

Sample details

Collection date
2005
Earliest release date
2007-05-23
Sampling location
Viet Nam (South Viet Nam)
Isolate name
521V/VNM/05

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-03 13:48insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2007-05-23
NCBI update date
2016-07-23
INSDC accession

Submission details

Submission ID
AM292436.1
Submitting group
Date submitted
2026-03-03 13:48:25 UTC
Date released
2026-03-03 13:50:41 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
211
Length
891 (12%)
Variant
False

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2448G
  • G2452C
  • G2453C
  • A2454C
  • G2475A
  • G2476A
  • T2478C
  • C2481G
  • C2483A
  • T2484C
  • T2485A
  • C2486A
  • C2487T
  • G2489A
  • A2490G
  • T2493G
  • G2494A
  • G2495A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the U05876.1 reference

Substitutions

VP1

  • VP1:G3P
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:I179V
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue