This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PCDH.1

Iran/LOC_000PCDH.1/2015
P. Biglari, S. Chinikar, H. Belqeiszadeh, Z. Telmadarraiy, E. Mostafavi, M. Ghaffari, S. Javaherizadeh, N. Nowotny, A. R. Fooks & N. Shahhosseini

Bernhard Nocht Institute for Tropical Medicine

Sample details

Collection date
2015
Earliest release date
2016-09-24
Sampling location
Iran
Isolate name
Iran/IR-T3-HSU/2015

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-04 16:51insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2016-09-24
INSDC accession S segment

Host

Host

Submission details

Submission ID
KT931950.1.S
Submitting group
Date submitted
2026-06-04 16:51:08 UTC
Date released
2026-06-04 16:54:45 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
81
Length S segment
511 (28.3%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • T141C
  • C150T
  • G155A
  • T159A
  • T166C
  • A186G
  • T195C
  • C201T
  • A213G
  • T219C
  • C228T
  • G231A
  • T234G
  • T237C
  • G246A
  • A252C
  • A255G
  • T258C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:S39N
  • NP:A100T
  • NP:E108D
  • NP:S109N
  • NP:T111A
  • NP:Q179L
  • NP:E187G
  • NP:D199E
Deletions
N/A
Insertions
N/A

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