This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000PC9R.1
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Download FASTA
Download metadata TSV
Display Name: India/LOC_000PC9R.1/2019
P. Yadav,
A. Shete-Aich,
D. Nyayanit &
R. Sahay
Sample details
Collection date
2019
Collection date (lower bound)
2019-01-01
Collection date (upper bound)
2019-12-31
Earliest release date
2021-08-07
Collection country
India
Collection subdivision level 1
Gujarat State, Bhavnagar
Isolate name
MCL-19-H-3110
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-12 15:10
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Institute of Virology, Maximum Containment Laboratory
INSDC
NCBI release date
2021-08-07
INSDC accession L
MW298534.1
INSDC accession M
MW298540.1
INSDC accession S
MW298548.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
11932
Total SNPs L
1565
Total inserted nucs L
2
Total deleted nucs L
49
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
98.93%
Alignment and QC metrics M
Length M
5337
Total SNPs M
673
Total inserted nucs M
5
Total deleted nucs M
4
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
99.44%
Alignment and QC metrics S
Length S
1634
Total SNPs S
212
Total inserted nucs S
2
Total deleted nucs S
1
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
97.67%
Submission details
Submission ID
MW298534.1.L/MW298540.1.M/MW298548.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-12 15:10:31 UTC
Date released
2025-09-12 15:15:01 UTC
Files
Annotations
LOC_000PC9R.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
10
C
L:
G
23
T
L:
A
35
G
L:
G
43
C
L:
C
48
T
L:
T
49
C
L:
C
59
T
L:
C
64
T
L:
T
65
G
L:
G
71
T
L:
A
72
T
L:
C
85
T
L:
G
93
A
L:
A
109
G
L:
G
112
A
L:
T
121
C
L:
T
131
A
L:
C
136
T
Show more
M
M:
G
55
A
M:
A
57
G
M:
G
76
A
M:
C
85
T
M:
T
86
C
M:
A
101
G
M:
A
107
G
M:
A
117
G
M:
C
119
T
M:
C
120
T
M:
T
122
C
M:
C
126
T
M:
A
128
G
M:
G
143
A
M:
A
146
G
M:
G
147
A
M:
G
149
A
M:
T
152
C
Show more
S
S:
T
48
C
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
G
99
A
S:
A
118
G
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
169
A
S:
C
178
A
S:
T
182
C
S:
C
217
T
S:
G
229
A
S:
C
235
T
S:
T
250
A
S:
G
262
A
S:
A
268
C
Show more
Deletions
L:11918-11931, L:11937-11943, L:11953-11980, M:5165-5168, S:1617
Insertions
ins_L:66:CC, ins_M:5169:GGGGG, ins_S:1577:A, ins_S:1612:C
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
M
GPC:
I
9
V
GPC:
L
10
F
GPC:
E
19
K
GPC:
E
26
G
GPC:
R
28
G
GPC:
T
34
V
GPC:
N
41
S
GPC:
P
42
Q
GPC:
S
44
P
GPC:
P
47
L
GPC:
S
53
P
GPC:
I
54
F
GPC:
L
56
P
GPC:
P
66
L
GPC:
G
69
R
GPC:
V
76
P
GPC:
I
82
A
Show more
NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
A
271
S
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
T
163
V
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
V
214
I
RdRp:
K
275
R
Show more
Deletions
None
Insertions
None
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