This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PC25.1

Display Name: China/LOC_000PC25.1/2016
Z. Cao

Sample details

Collection date
2016
Collection date (lower bound)
2016-01-01
Collection date (upper bound)
2016-12-31
Earliest release date
2022-11-09
Collection country
China
Isolate name
CVA16-2016-210-TY-SX-CHN

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-16 12:17insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Taiyuan Center for Disease Control and Prevention, Department of Microbiology Test

INSDC

NCBI release date
2022-11-09
NCBI update date
2022-11-09
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
891
Total SNPs
215
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
12.02%
Total stop codons
0

Submission details

Submission ID
OP373843.1
Submitting group
Date submitted
2025-12-16 12:17:19 UTC
Date released
2025-12-16 12:30:13 UTC

Clade

Clade CV-A16
B1b

Genotype

Genotype
CV-A16

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2448G
  • G2452C
  • G2453C
  • A2454C
  • G2475A
  • G2476A
  • C2481A
  • C2483A
  • T2484C
  • T2485A
  • C2486A
  • C2487T
  • G2489A
  • T2493G
  • G2494A
  • G2495A
  • T2496C
  • T2499C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions

    VP1

  • VP1:G3P
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:L23M
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
    • Deletions
    None
    Insertions
    None

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