This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PAHA.1

Zambia/LOC_000PAHA.1/2015
M. Kajihara, M. Simuunza, N. Saasa, G. Dautu, A. Mori-Kajihara, Y. Qiu, R. Nakao, Y. Eto, H. Furumoto, B. M. Hang'ombe, Y. Orba, H. Sawa, E. Simulundu, S. Fukushi, S. Morikawa, M. Saijo, J. Arikawa, S. Kabilika, M. Monze, V. Mukonka, A. Mweene, A. Takada & K. Yoshimatsu

Research Center for Zoonosis Control; Kita 20 Nishi 10, Kita-ku, Sapporo, Hokkaido 001-0020

Sample details

Collection date
2015
Earliest release date
2021-05-14
Sampling location
Zambia
Isolate name
ZT15-90

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-27 15:36insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2021-05-14
INSDC accession M

Submission details

Submission ID
LC534910.1.M
Submitting group
Date submitted
2026-02-27 15:36:26 UTC
Date released
2026-02-27 15:39:16 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs M
77
Length M
514 (9.42%)
Variant M
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • T4609C
  • T4615C
  • C4618T
  • T4630C
  • C4640T
  • A4642G
  • T4645C
  • C4648T
  • A4660G
  • A4686G
  • G4714A
  • A4717G
  • C4720T
  • A4723G
  • A4725G
  • T4738C
  • C4744A
  • T4750C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:K1533R
  • GPC:Q1546R
  • GPC:N1564D
  • GPC:S1571G
  • GPC:G1589S
  • GPC:V1595I
  • GPC:I1599L
  • GPC:T1601I
  • GPC:L1603I
  • GPC:T1604A
  • GPC:R1628K
  • GPC:R1661K
Deletions
N/A
Insertions
N/A

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