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LOC_000PACM.1
Download
Download FASTA
Download metadata TSV
Display Name: Malaysia/LOC_000PACM.1
C. Yoke-Fun &
S. AbuBakar
Sample details
Collection date (upper bound)
2006-08-25
Earliest release date
2006-08-25
Collection country
Malaysia
Isolate name
ENT/PM/SHA52
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-01-06 21:38
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
AbuBakar S., Medical Microbiology, University of Malaya, Faculty of Medicine, Kuala Lumpur 50603
INSDC
NCBI release date
2006-08-25
NCBI update date
2006-10-03
INSDC accession
AM396584.1
Alignment and QC metrics
Length
7408
Total SNPs
1443
Total inserted nucs
7
Total deleted nucs
6
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
99.99%
Total stop codons
0
Submission details
Submission ID
AM396584.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-06 21:38:00 UTC
Date released
2026-01-06 21:39:44 UTC
Clade
Clade EV-A71
C2
Genotype
Genotype
EV-A71
Nucleotide mutations
Mutations called relative to the
U22521.1
reference
Substitutions
T
11
C
T
13
G
G
19
T
C
21
T
T
36
C
T
51
C
A
54
T
T
59
C
T
61
C
C
62
T
T
63
G
C
64
A
A
76
G
C
94
T
T
99
C
T
102
A
T
103
G
A
118
T
Show more
Deletions
87, 105, 106, 119, 120, 743
Insertions
ins_90:TT, ins_128:AC, ins_739:TCA
Amino acid mutations
Mutations called relative to the
U22521.1
reference
Substitutions
2A
2A:
T
26
N
2A:
R
68
M
2A:
V
82
I
2A:
E
102
V
2A:
S
129
N
2A:
E
145
D
2B
2B:
R
11
D
2B:
T
15
M
2B:
I
83
V
2C
2C:
M
11
A
2C:
A
12
V
2C:
N
13
S
2C:
F
22
S
2C:
K
27
N
2C:
V
60
I
2C:
I
81
S
2C:
R
151
H
2C:
V
171
I
2C:
A
173
T
2C:
V
200
I
2C:
Y
243
F
2C:
D
257
E
2C:
K
268
R
2C:
T
271
S
2C:
A
319
V
3A
3A:
E
39
D
3A:
I
44
V
3A:
E
46
D
3A:
T
47
S
3A:
V
61
I
3A:
I
65
V
3B
3B:
P
9
Q
3B:
I
10
T
3C
3C:
A
18
V
3C:
R
33
H
3C:
I
36
V
3C:
I
54
V
3C:
N
55
K
3C:
V
56
I
3C:
L
57
V
3C:
K
88
R
3C:
C
89
F
3C:
V
93
T
3C:
T
95
S
3C:
G
96
P
3C:
I
109
M
3C:
P
144
A
3C:
V
150
A
3C:
S
153
A
3C:
I
157
V
3C:
A
169
G
Show more
3D
3D:
R
10
K
3D:
N
37
T
3D:
Y
73
F
3D:
T
75
K
3D:
Q
76
E
3D:
N
91
K
3D:
S
93
T
3D:
E
99
D
3D:
Y
106
N
3D:
V
134
T
3D:
T
138
V
3D:
R
140
K
3D:
L
143
F
3D:
N
154
Y
3D:
S
163
R
3D:
S
164
A
3D:
L
165
V
3D:
R
169
K
Show more
VP1
VP1:
K
18
R
VP1:
P
22
R
VP1:
P
30
Q
VP1:
D
31
N
VP1:
K
98
E
VP1:
R
145
E
VP1:
D
167
E
VP1:
P
172
Q
VP1:
S
183
L
VP1:
S
240
T
VP1:
E
244
K
VP1:
S
246
P
VP1:
S
275
A
VP1:
D
282
N
VP1:
T
289
A
VP2
VP2:
N
45
S
VP2:
P
94
Q
VP2:
N
143
D
VP2:
T
200
A
VP2:
F
224
Y
VP3
VP3:
D
93
S
VP3:
M
100
L
VP3:
T
232
A
VP3:
E
237
Q
VP3:
A
239
G
Deletions
None
Insertions
None
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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