This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PA27.1

Display Name: Pakistan/LOC_000PA27.1/2019
M. Umair, A. Khurshid, M. M. Alam, R. Akhtar, M. Salman & A. Ikram

Sample details

Collection date
2019
Collection date (lower bound)
2019-01-01
Collection date (upper bound)
2019-12-31
Earliest release date
2020-08-26
Collection country
Pakistan
Isolate name
CCHFV28-NIH-PAK-2019

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-16 19:41insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Institute of Health, Department of Virology

INSDC

NCBI release date
2020-08-26
INSDC accession S

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics S

Length S
245
Total SNPs S
33
Total inserted nucs S
1
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
1
Frame shifts S
NP:82-483(nt:299-1504)
Completeness S
14.59%

Submission details

Submission ID
MN839491.1.S
Submitting group
Date submitted
2025-09-16 19:41:39 UTC
Date released
2025-09-16 19:45:28 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G292A
  • S:C295T
  • S:A322T
  • S:A325G
  • S:T334G
  • S:A337G
  • S:G346A
  • S:G367A
  • S:C370A
  • S:A394G
  • S:G397A
  • S:C400T
  • S:C403G
  • S:C406T
  • S:G409C
  • S:G418A
  • S:A425T
  • S:G428A
    • Deletions
    None
    Insertions
    ins_S:298:T

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions
    Deletions
    None
    Insertions
    None

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