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LOC_000P9ZD.1
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Display Name: China/LOC_000P9ZD.1/2015
Y. Li &
C. Yan
Sample details
Collection date
2015
Collection date (lower bound)
2015-01-01
Collection date (upper bound)
2015-12-31
Earliest release date
2020-04-01
Collection country
China
Collection subdivision level 1
Inner Mongolia
Isolate name
HANM-18
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-17 15:28
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Military Veterinary Institute, Key Laboratory of Jilin Province for Zoonosis Prevention and Control
INSDC
NCBI release date
2020-04-01
INSDC accession L
MN832723.1
INSDC accession S
MN832721.1
Host
Host taxon id
266040
Host name scientific
Hyalomma asiaticum
Alignment and QC metrics L
Length L
12155
Total SNPs L
1556
Total inserted nucs L
60
Total deleted nucs L
13
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
100.00%
Alignment and QC metrics S
Length S
1672
Total SNPs S
225
Total inserted nucs S
2
Total deleted nucs S
2
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
100.00%
Submission details
Submission ID
MN832723.1.L/MN832721.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-17 15:28:31 UTC
Date released
2025-09-17 15:32:29 UTC
Files
Annotations
LOC_000P9ZD.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
10
C
L:
G
23
T
L:
G
32
A
L:
A
35
G
L:
A
42
G
L:
G
43
T
L:
T
49
C
L:
G
56
A
L:
C
59
T
L:
T
65
C
L:
T
70
C
L:
G
71
C
L:
G
93
A
L:
A
109
G
L:
G
112
A
L:
T
131
A
L:
T
139
C
L:
T
151
C
Show more
S
S:
T
23
C
S:
T
48
C
S:
G
54
A
S:
A
61
G
S:
C
64
T
S:
G
67
A
S:
A
78
G
S:
G
99
A
S:
A
118
G
S:
C
142
T
S:
A
148
G
S:
C
151
T
S:
T
157
C
S:
C
166
T
S:
C
178
A
S:
T
182
C
S:
G
229
A
S:
C
235
T
Show more
Deletions
L:11974-11978, L:12028, L:12055-12058, L:12071-12073, S:1534, S:1611
Insertions
ins_L:0:T, ins_L:66:CCT, ins_L:11922:T, ins_L:11924:G, ins_L:11987:C, ins_L:11993:TGCT, ins_L:12031:G, ins_L:12051:TG, ins_L:12097:CCATTTGTTTCAGTTTCATTATTTCCAGGGTGTGGGGGGAACGAT, ins_L:12108:A, ins_S:1577:A, ins_S:1618:T
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
N
8
S
NP:
R
15
K
NP:
F
73
L
NP:
T
102
I
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
L
NP:
D
199
E
NP:
V
205
T
NP:
I
246
V
NP:
K
252
N
NP:
G
259
R
NP:
R
270
K
NP:
A
271
T
NP:
S
275
N
NP:
A
285
T
Show more
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
I
45
V
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
C
RdRp:
T
215
S
RdRp:
I
223
M
RdRp:
N
236
S
RdRp:
D
264
E
Show more
Deletions
None
Insertions
None
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