This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P9QX.1

USA/LOC_000P9QX.1/2009-01-01
D. Swetnam, S. G. Widen, T. G. Wood, M. Reyna, L. Wilkerson, M. Debboun, D. A. Symonds, D. G. Mead, B. J. Beaty, H. Guzman, R. B. Tesh, A. D. T. Barrett & D. M. Swetnam

University of Texas Medical Branch, Microbiology and Immunology

Sample details

Collection date
2009
Earliest release date
2018-11-19
Sampling location
USA (GA, Valdasta, Lowndes)
Isolate name
Lwn 09-846

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-26 20:30insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-11-19
NCBI update date
2018-11-19
INSDC accession

Host

Host

Submission details

Submission ID
MH170262.1
Submitting group
Date submitted
2026-03-26 20:30:44 UTC
Date released
2026-03-26 20:55:50 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
51
Length
11015 (99.9%)
Amino Acid Mutations from founder clade
  • NS2A:H119Y
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • NS5:T898I
  • capsid:S100L
  • env:A51V
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:F155L
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T348C
  • C395T
  • A630G
  • G789A
  • T928C
  • C933T
  • C1118T
  • C1123T
  • T1155C
  • T1442C
  • C1465T
  • T1971A
  • C2466T
  • G2682A
  • T2772A
  • C2778T
  • C2859T
  • C2982T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:M15L

NS2A

  • NS2A:H119Y

NS5

  • NS5:T898I

capsid

  • capsid:S100L

env

  • env:A51V
  • env:V159A
  • env:L167F

prM

  • prM:F155L
Deletions
N/A
Insertions
N/A

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