This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P9QX.1

Display Name: Russia/LOC_000P9QX.1/2016-06-23
A. Volynkina, E. Kotenev & A. Kolosov

Sample details

Collection date
2016-06-23
Collection date (lower bound)
2016-06-23
Collection date (upper bound)
2016-06-23
Earliest release date
2020-07-27
Collection country
Russia
Isolate name
130-STV/HU-2016

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-14 10:25insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory on Natural Focal Infections

INSDC

NCBI release date
2020-07-27
INSDC accession S

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics S

Length S
538
Total SNPs S
98
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
32.18%
Total stop codons S
0

Submission details

Submission ID
MN624350.1.S
Submitting group
Date submitted
2026-01-14 10:25:35 UTC
Date released
2026-01-14 10:30:09 UTC

Lineage

Segment S Lineage
unassigned

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C115T
  • S:A121G
  • S:G123T
  • S:T127C
  • S:A130G
  • S:C154T
  • S:T157C
  • S:T163C
  • S:G171A
  • S:T175G
  • S:C178A
  • S:T182C
  • S:G184A
  • S:G189A
  • S:G196C
  • S:T199C
  • S:G202A
  • S:C208A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:G23V
  • NP:S39N
  • NP:R45K
  • NP:A100T
  • NP:S109N
  • NP:T124A
  • NP:G125S
  • NP:N150S
  • NP:A154S
  • NP:S165P
  • NP:G185S
  • NP:H195R
  • NP:D199E
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue