This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P9QX.1

Display Name: Spain/LOC_000P9QX.1
R. R. Sanchez-Arroyo, F. F. de Ory, M. A. M. A. Budino, M. A. M. A. Garcinuno, C. C. de la Hoz, A. A. Gutierrez, F. F. Diez, A. A. Negredo, A. A. Vazquez, L. L. Hernandez & M. P. M. P. Sanchez-Seco

Sample details

Collection date (upper bound)
2021-01-13
Earliest release date
2021-01-13
Collection country
Spain

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 15:28insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Center of Microbiology, Institute of Health Carlos III, Arbovirus and Imported Viral diseases

INSDC

NCBI release date
2021-01-13
INSDC accession L
INSDC accession M
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma lusitanicum

Alignment and QC metrics L

Length L
12080
Total SNPs L
692
Total inserted nucs L
2
Total deleted nucs L
3
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.78%

Alignment and QC metrics M

Length M
5324
Total SNPs M
436
Total inserted nucs M
1
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
99.20%

Alignment and QC metrics S

Length S
1638
Total SNPs S
216
Total inserted nucs S
1
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
97.91%

Submission details

Submission ID
MN689741.1.L/MN689740.1.M/MN689739.1.S
Submitting group
Date submitted
2025-09-17 15:28:31 UTC
Date released
2025-09-17 15:32:29 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:T49C
  • L:C63G
  • L:C64T
  • L:T65C
  • L:T67C
  • L:T70C
  • L:G93A
  • L:T160C
  • L:T163C
  • L:C208T
  • L:G217A
  • L:T229C
  • L:T254A
  • L:A297T
  • L:G301T
  • L:C313T
  • L:C331T
  • L:C332T

    • M

  • M:G50C
  • M:T68C
  • M:A70G
  • M:C81T
  • M:C85T
  • M:T86C
  • M:A117G
  • M:C119A
  • M:A128G
  • M:A146G
  • M:G149A
  • M:T159C
  • M:A161G
  • M:A169G
  • M:A174G
  • M:G175A
  • M:C177T
  • M:A192G

    • S

  • S:C31T
  • S:A50G
  • S:G54A
  • S:G67A
  • S:C82T
  • S:A118G
  • S:A124G
  • S:A130G
  • S:C139T
  • S:C142T
  • S:C154T
  • S:C166T
  • S:G169A
  • S:C178G
  • S:T182C
  • S:G189A
  • S:G190A
  • S:T199C
    • Deletions
    L:12092-12094
    Insertions
    ins_L:11928:TG, ins_M:5168:G, ins_S:1579:C

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:I9V
  • GPC:S23P
  • GPC:E26G
  • GPC:R28E
  • GPC:H29Y
  • GPC:T34G
  • GPC:N41S
  • GPC:P42Q
  • GPC:P58S
  • GPC:S68I
  • GPC:P80S
  • GPC:G85E
  • GPC:S86G
  • GPC:P88S
  • GPC:S90P
  • GPC:T92A
  • GPC:P94S
  • GPC:L96P

    • NP

  • NP:R45K
  • NP:D116E
  • NP:T124S
  • NP:G125S
  • NP:N182S
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:A271S
  • NP:S301G
  • NP:Q405L
  • NP:V436I

    • RdRp

  • RdRp:S6N
  • RdRp:Y60N
  • RdRp:Q74L
  • RdRp:E75D
  • RdRp:S205L
  • RdRp:N206H
  • RdRp:T481A
  • RdRp:I505T
  • RdRp:R764K
  • RdRp:T767A
  • RdRp:P774L
  • RdRp:N779S
  • RdRp:S782G
  • RdRp:I783T
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T818I
  • RdRp:I855V
    • Deletions
    None
    Insertions
    None

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