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LOC_000P9QX.1
Download
Download FASTA
Download metadata TSV
Senegal/LOC_000P9QX.1/1969
J. W. Koehler,
K. L. Delp,
B. J. Kearney,
T. A. Conrad,
R. J. Schoepp,
A. R. Garrison,
L. A. Altimura,
C. A. Rossi &
T. D. Minogue
USAMRIID, DSD
Sample details
Collection date
1969
Earliest release date
2017-04-02
Sampling location
Senegal
Isolate name
UCCR4416
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-19 17:25
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-04-02
INSDC accession L
KY484025.1
INSDC accession M
KY484026.1
INSDC accession S
KY484027.1
Submission details
Submission ID
KY484025.1.L/KY484026.1.M/KY484027.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-19 17:24:57 UTC
Date released
2026-03-19 17:29:48 UTC
Host
Host
Hyalomma truncatum
Lineage
Segment S Lineage
I
Files
Annotations
LOC_000P9QX.1.embl
Alignment and QC
Total SNPs M
1538
Total inserted nucs M
70
Total deleted nucs M
50
Length M
5386 (100%)
Variant M
True
Total SNPs S
316
Total inserted nucs S
17
Total deleted nucs S
3
Length S
1686 (100%)
Variant S
False
Total SNPs L
226
Total inserted nucs L
52
Length L
12160 (100%)
Variant L
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
T
65
C
T
70
C
G
93
A
T
254
A
G
277
C
A
298
G
G
304
A
C
313
T
T
340
C
T
550
G
G
553
A
G
619
A
C
673
T
T
781
C
C
904
T
G
946
A
G
961
A
A
1003
G
Show more
M
G
50
T
A
51
G
A
52
T
G
56
T
A
57
G
T
58
A
T
59
A
G
60
A
A
64
G
T
65
A
C
66
T
A
69
G
A
70
T
T
71
G
T
72
A
C
74
G
G
76
A
A
80
G
Show more
S
C
38
A
T
39
C
G
54
A
A
61
G
G
67
A
G
73
A
T
79
C
A
92
C
G
99
A
G
100
A
A
109
G
A
118
G
T
127
C
A
130
G
C
142
T
C
160
T
T
163
C
C
166
T
Show more
Deletions
M
638-652, 5166-5200
S
1512-1514
Insertions
L
ins_12108:TTCATCATCATCGTTATTATCTTGGGGTGTGGGGGGAACGATTTCTTTGAGA
M
ins_224:ATGTCTGTGCTG, ins_359:ACTTCTGTCGCTACCATCAAAACACAAGAGTCAGAA, ins_5241:GCTAA, ins_5261:GCACCTT, ins_5288:TAACAATCAA
S
ins_1582:TTACAGTTACCAAGAC, ins_1616:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
K
GPC:
H
2
F
GPC:
I
3
M
GPC:
S
4
L
GPC:
M
6
T
GPC:
Y
7
N
GPC:
A
8
F
GPC:
I
9
F
GPC:
L
10
F
GPC:
L
12
Q
GPC:
Q
13
L
GPC:
C
15
W
GPC:
L
17
G
GPC:
D
40
V
GPC:
N
41
A
GPC:
P
42
S
GPC:
S
43
G
GPC:
S
44
G
Show more
NP
NP:
M
13
L
NP:
R
15
K
NP:
S
39
N
NP:
V
40
M
NP:
S
52
G
NP:
F
73
Y
NP:
K
91
R
NP:
A
100
T
NP:
T
124
A
NP:
G
125
N
NP:
A
154
S
NP:
H
195
K
NP:
V
198
I
NP:
D
199
E
NP:
I
220
V
NP:
I
246
V
NP:
D
248
E
NP:
N
258
K
Show more
RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
I
505
T
RdRp:
R
764
K
RdRp:
T
767
A
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
G
1047
E
RdRp:
I
1085
V
RdRp:
K
1167
R
RdRp:
V
1228
I
RdRp:
N
1367
D
RdRp:
S
1436
N
RdRp:
T
1449
N
RdRp:
P
1660
T
RdRp:
T
1675
N
RdRp:
N
1799
S
Show more
Deletions
GPC
GPC:19-38, GPC:182-206
Insertions
GPC
ins_GPC:131:PSTTAGSGASTPSNTTSNKPDVNSLTSPILEAKSSP, ins_GPC:221:SKQTDTITLEISPKIQTTQS
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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