This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P9GE.1

China/LOC_000P9GE.1/2017-04-12
Z. Han, Y. Song, J. Xiao, L. Jiang, W. Huang, H. Wei, J. Li, H. Zeng, Q. Yu, D. Yu, Y. Zhang, C. Li, Z. Zhan, Y. Shi, Y. Xiong, X. Wang, T. Ji, Q. Yang, S. Zhu, D. Yan & W. Xu

Chinese Center for Disease Control and Prevention, WHO WPRO Regional Polio Reference Laboratory, National Institute for Viral Disease Control and Prevention

Sample details

Collection date
2017-04-12
Earliest release date
2021-03-07
Sampling location
China
Isolate name
CQ17-38/CQ/West/CHN/2017-04-12

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-12 21:10insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2021-03-07
NCBI update date
2021-03-07
INSDC accession

Host

Host

Submission details

Submission ID
MT211994.1
Submitting group
Date submitted
2026-06-12 21:09:51 UTC
Date released
2026-06-12 21:18:57 UTC

Clade

Clade CV-A16
B1b

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
1566
Total inserted nucs
1
Total deleted nucs
6
Length
7408 (100%)

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • C11T
  • T12C
  • G13T
  • T14G
  • A22C
  • T54A
  • A58G
  • A63G
  • A67G
  • T69C
  • C71T
  • G89A
  • T90G
  • T103G
  • A119T
  • C123T
  • C126A
  • T127A
Deletions

100, 134, 583, 702-704
Insertions

ins_7341:T

Amino acid substitutions

Substitutions called relative to the U05876.1 reference

Substitutions

2A

  • 2A:D57N
  • 2A:R68K
  • 2A:S77T

2B

  • 2B:T15M
  • 2B:I47V
  • 2B:I57V
  • 2B:A96V

2C

  • 2C:N23G
  • 2C:A39V
  • 2C:T96V
  • 2C:I228V
  • 2C:R268K
  • 2C:S271T
  • 2C:V303I
  • 2C:Y318S

3A

  • 3A:D39E
  • 3A:P48S
  • 3A:I61V

3B

  • 3B:T10A
  • 3B:I15V

3C

  • 3C:V36I
  • 3C:I56V
  • 3C:I86V
  • 3C:N93T
  • 3C:S95T
  • 3C:A96G
  • 3C:V157I

3D

  • 3D:V6M
  • 3D:P8S
  • 3D:V29A
  • 3D:H31Y
  • 3D:N37S
  • 3D:H44T
  • 3D:R46K
  • 3D:I74V
  • 3D:K75T
  • 3D:E76Q
  • 3D:S93N
  • 3D:Q94K
  • 3D:N106F
  • 3D:I125V
  • 3D:V138T
  • 3D:S139T
  • 3D:I165L
  • 3D:A190T

VP1

  • VP1:G3P
  • VP1:A11T
  • VP1:T13N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:L23M
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:I179V

VP2

  • VP2:I32V
  • VP2:K43P
  • VP2:A45T
  • VP2:I126V
  • VP2:D139T
  • VP2:V149A
  • VP2:N162H
  • VP2:V170I
  • VP2:I215L
  • VP2:V217I
  • VP2:A226T
  • VP2:I252V

VP3

  • VP3:A33S
  • VP3:R41H
  • VP3:Q59K
  • VP3:S60T
  • VP3:V85A
  • VP3:N93D
  • VP3:G141N
  • VP3:L147I
  • VP3:I169V
  • VP3:K182R
  • VP3:D183A
  • VP3:T193I
  • VP3:S238T
Deletions
N/A
Insertions
N/A

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