This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P936.1

Display Name: China/LOC_000P936.1/1984
Moming, A.; Zhu, Q.; Bai, Y.; Jin, J.; Wu, Q.; Su, Z.; Tang, S.; Zhang, Y.; Shen, S.; Deng, F.

Submission details

Submission ID
OR823870.1.L
Submitting group
Date submitted
2025-05-09 10:44:30 UTC
Date released
2025-05-09 10:48:49 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-09 10:44insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences

Alignment and QC metrics L

Completeness L
100.00%
Length L
12358
Total ambiguous nucs L
0
Total deleted nucs L
10
Total frame shifts L
0
Total inserted nucs L
260
Total SNPs L
1629
Total unknown nucs L
0

Sample details

Earliest release date
2024-12-21
Collection country
China
Collection date
1984
Collection date (lower bound)
1984-01-01
Collection date (upper bound)
1984-12-31

Host

Host name scientific
Ixodoidea
Host taxon id

INSDC

INSDC accession L
NCBI release date
2024-12-21

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:T10C
  • L:G23T
  • L:A35G
  • L:G43C
  • L:T49C
  • L:G56A
  • L:T66G
  • L:G71T
  • L:A72T
  • L:A73G
  • L:G93A
  • L:A109G
  • L:T131A
  • L:C136T
  • L:C145T
  • L:A147G
  • L:T151C
  • L:T154C
    • Deletions
    L:58, L:11921-11924, L:11974-11978
    Insertions
    ins_L:12106:TTATTTCCAGGGTGTGGGGG, ins_L:12101:AG, ins_L:12108:ACGATTTCTTCAGCGCCCCCGCCGCCGAGGGAAGGCTCTTTATTTTGCAGTAGGTCACGGGGTAGCGGGGCATCCTGGGATTTGTAGTCTCGGG, ins_L:11991:GTCG, ins_L:12044:TCTGTCTTAATGCA, ins_L:12064:GCCT, ins_L:67:CCC, ins_L:0:CCTGGGTCCTCTGGAAGAGAAACAGGTGCTCTTCCCTGGGGAGCCATCTCTCCAGCCCCAAGCTCCTTGGTTTCTCCTTGGTTTCACCTTAGTCTTCTGAG, ins_L:11928:TGTGTG, ins_L:11987:C, ins_L:12089:TCACTATTCAT

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:N24S
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:I157M
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Q
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:S281T
    • Deletions
    None
    Insertions
    None

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