This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P8UQ.1

USA/LOC_000P8UQ.1/2006-01-01
D. Swetnam, S. G. Widen, T. G. Wood, M. Reyna, L. Wilkerson, M. Debboun, D. A. Symonds, D. G. Mead, B. J. Beaty, H. Guzman, R. B. Tesh, A. D. T. Barrett & D. M. Swetnam

University of Texas Medical Branch, Microbiology and Immunology

Sample details

Collection date
2006
Earliest release date
2018-11-19
Sampling location
USA (CO, Weld County)
Isolate name
CO 06-608

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-18 12:55insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-11-19
NCBI update date
2018-11-19
INSDC accession

Host

Host

Submission details

Submission ID
MH170232.1
Submitting group
Date submitted
2026-03-18 12:54:31 UTC
Date released
2026-03-18 13:10:32 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
51
Length
11013 (99.9%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85T
  • NS5:K177R
  • NS5:K314R
  • NS5:A860T
  • capsid:M34I
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G198A
  • A630G
  • C660T
  • A1320G
  • T1442C
  • C1465T
  • C1974T
  • A2184G
  • C2466T
  • T2841C
  • T3399C
  • C4107T
  • A4146G
  • A4221C
  • A4575G
  • C4803T
  • T5046C
  • G5280A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS4A

  • NS4A:A85T

NS5

  • NS5:K314R
  • NS5:A860T

capsid

  • capsid:M34I

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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