This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P8UQ.1

Latvia/LOC_000P8UQ.1/2021-09-10
M. Bisseux, A. Mirand, C. Henquell, J.-L. Bailly, B. Niedre-Otomere, K. Benschop & J. Cremer

Centre for Infectious Disease Control (Cib) | Centre for Infectious Disease Research, Diagnostics and Laboratory Surveillance (Ids) Dutch National Institute for Public Health and the Environment, Molecular Virologist Enterovirus and Hepatitis B Virus Surveillance

Sample details

Collection date
2021-09-10
Earliest release date
2025-04-12
Sampling location
Latvia
Isolate name
S36_2108079811_C1R5_LVA_RIG_10_09_2021

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-01 15:12insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-04-12
NCBI update date
2025-04-12
INSDC accession

Host

Host

Submission details

Submission ID
PQ284498.1
Submitting group
Date submitted
2026-04-01 15:12:22 UTC
Date released
2026-04-01 15:41:16 UTC

Clade

Clade EV-A71
C1-like

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
1381
Total inserted nucs
10
Total deleted nucs
5
Length
7296 (98.4%)
Variant
False

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T51C
  • A54C
  • G58A
  • T67A
  • C69T
  • A76G
  • C90A
  • T95C
  • T99C
  • G100A
  • A101T
  • T104C
  • C122T
  • A123G
  • A124C
  • C126T
  • T138C
  • T142C
Deletions

60, 698-700, 706
Insertions

ins_63:A, ins_128:CT, ins_686:GTTA, ins_7326:GGC

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

2A

  • 2A:T26N
  • 2A:V82I
  • 2A:F83Y
  • 2A:E102V
  • 2A:S129N

2B

  • 2B:R11D
  • 2B:K29R

2C

  • 2C:I21V
  • 2C:F22S
  • 2C:N48S
  • 2C:V60I
  • 2C:I81S
  • 2C:R151H
  • 2C:A173T
  • 2C:V200I
  • 2C:T214A
  • 2C:Y243F
  • 2C:T271S

3A

  • 3A:E39D

3B

  • 3B:P9Q
  • 3B:I10T

3C

  • 3C:A18V
  • 3C:I36V
  • 3C:V49I
  • 3C:L53S
  • 3C:I54V
  • 3C:C89F
  • 3C:V93S
  • 3C:T95S
  • 3C:I109M
  • 3C:P144A
  • 3C:A169G
  • 3C:G173S
  • 3C:S177G

3D

  • 3D:M6V
  • 3D:R10K
  • 3D:T44H
  • 3D:V74I
  • 3D:T75R
  • 3D:Q76E
  • 3D:D89E
  • 3D:N91D
  • 3D:K94Q
  • 3D:E105D
  • 3D:Y106N
  • 3D:V134T
  • 3D:T138V
  • 3D:R140K
  • 3D:L143F
  • 3D:N154Y
  • 3D:S163R
  • 3D:L165V

VP1

  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:I262V
  • VP1:S275A
  • VP1:D282N

VP2

  • VP2:N45S
  • VP2:P94Q
  • VP2:N143D
  • VP2:I170V
  • VP2:M198I
  • VP2:T200A

VP3

  • VP3:M100L
  • VP3:K144R
  • VP3:T232S
  • VP3:E237Q
  • VP3:A239G
Deletions
N/A
Insertions
N/A

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