This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P8UQ.1

USA/LOC_000P8UQ.1/2008
D. Swetnam, S. G. Widen, T. G. Wood, M. Reyna, L. Wilkerson, M. Debboun, D. A. Symonds, D. G. Mead, B. J. Beaty, H. Guzman, R. B. Tesh, A. D. T. Barrett & D. M. Swetnam

University of Texas Medical Branch, Microbiology and Immunology

Sample details

Collection date
2008
Earliest release date
2018-11-19
Sampling location
USA (CO, Wellington, Larimer County)
Isolate name
CO 08-13382

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-21 14:54insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-11-19
NCBI update date
2018-11-19
INSDC accession

Host

Host

Submission details

Submission ID
MH170240.1
Submitting group
Date submitted
2026-02-21 14:54:02 UTC
Date released
2026-02-21 15:14:05 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
57
Length
11022 (99.9%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A459G
  • A607G
  • A630G
  • A1401G
  • T1442C
  • C1465T
  • T1965C
  • T2190C
  • C2371T
  • C2466T
  • T3138C
  • C3504T
  • C3680T
  • C3774T
  • C3808T
  • C4107T
  • A4146G
  • A4611G
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS3

  • NS3:I139M
  • NS3:S334T

    • NS4B

  • NS4B:S14I

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:T48A
    • Deletions
    N/A
    Insertions
    N/A

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