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Crimean-Congo Hemorrhagic Fever Virus
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Crimean-Congo Hemorrhagic Fever Virus
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LOC_000P8QY.1
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Download FASTA
Download metadata TSV
Display Name: Bulgaria/LOC_000P8QY.1/2012
B. L. Hua,
F. E. Scholte,
V. Ohlendorf,
A. Kopp,
M. Marklewitz,
C. Drosten,
S. T. Nichol,
C. Spiropoulou,
S. Junglen &
E. Bergeron
Sample details
Collection date
2012
Collection date (lower bound)
2012-01-01
Collection date (upper bound)
2012-12-31
Earliest release date
2020-11-04
Collection country
Bulgaria
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-11-13 14:27
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Institute of Virology, Charite Universitatsmedizin Berlin
INSDC
NCBI release date
2020-11-04
INSDC accession M
MK299345.1
Host
Host taxon id
67831
Host name scientific
Rhipicephalus bursa
Alignment and QC metrics M
Length M
5364
Total SNPs M
1548
Total inserted nucs M
109
Total deleted nucs M
43
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
98.73%
Submission details
Submission ID
MK299345.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-11-13 14:26:53 UTC
Date released
2025-11-13 14:30:46 UTC
Files
Annotations
LOC_000P8QY.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
M
M:
A
51
G
M:
A
52
T
M:
G
56
T
M:
A
57
G
M:
T
59
G
M:
G
60
A
M:
G
62
A
M:
T
67
C
M:
A
69
G
M:
A
70
C
M:
T
71
A
M:
G
76
A
M:
C
77
T
M:
A
80
G
M:
C
81
T
M:
T
83
G
M:
C
85
A
M:
A
87
C
Show more
Deletions
M:393-431, M:5179-5182
Insertions
ins_M:191:GGCACTGCCTTCAATTCAGTGCACAATGTTACCACTAATAGTCAGAAGCAGCCC, ins_M:566:TCC, ins_M:5285:CAGCATCATCCCCCCCTGGCAAACCTATGTCTACAAGAATCAACAAAGCAGA
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
2
F
GPC:
I
3
L
GPC:
S
4
L
GPC:
M
6
I
GPC:
Y
7
C
GPC:
A
8
T
GPC:
I
9
V
GPC:
C
11
H
GPC:
L
12
K
GPC:
Q
13
S
GPC:
L
14
P
GPC:
C
15
Q
GPC:
L
17
V
GPC:
G
18
S
GPC:
E
19
A
GPC:
H
21
S
GPC:
G
22
I
GPC:
S
23
T
Show more
Deletions
GPC:101-127
Insertions
ins_GPC:19:NTHLVSTSGNTTGVGTAFNSVHNVTTNSQKQP, ins_GPC:174:A
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