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LOC_000P8QY.1
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Download FASTA
Download metadata TSV
Display Name: Iran/LOC_000P8QY.1/2017-08-03
V. Baniasadi,
H. Qaedi,
T. Jalali,
M. H. Pouriayevali,
M. Fazlalipour,
T. Mohammadi,
Z. Fereydouni,
K. Azadmanesh &
M. Salehi-Vaziri
Sample details
Collection date
2017-08-03
Collection date (lower bound)
2017-08-03
Collection date (upper bound)
2017-08-03
Earliest release date
2019-01-08
Collection country
Iran
Isolate name
Iran-5900
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-12-18 16:36
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Pasteur Institute of Iran, Arboviruses and Viral Hemorrhagic Fevers Department (National Ref Lab)
INSDC
NCBI release date
2019-01-08
INSDC accession L
MH461099.1
INSDC accession M
MH461098.1
INSDC accession S
MH461097.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12143
Total SNPs L
1657
Total inserted nucs L
47
Total deleted nucs L
0
Total ambiguous nucs L
4
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.87%
Total stop codons L
0
Alignment and QC metrics M
Length M
5341
Total SNPs M
663
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
99.53%
Total stop codons M
0
Alignment and QC metrics S
Length S
1651
Total SNPs S
218
Total inserted nucs S
1
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
98.68%
Total stop codons S
0
Submission details
Submission ID
MH461099.1.L/MH461098.1.M/MH461097.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-18 16:36:21 UTC
Date released
2025-12-18 16:40:32 UTC
Lineage
Segment S Lineage
IV.1
Files
Annotations
LOC_000P8QY.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
G
23
T
L:
G
32
A
L:
A
35
G
L:
G
43
T
L:
T
49
C
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
66
C
L:
T
68
C
L:
G
69
A
L:
G
71
T
L:
C
85
T
L:
G
88
A
L:
G
93
A
L:
A
109
G
L:
C
117
A
L:
A
124
G
Show more
M
M:
A
69
G
M:
C
82
T
M:
C
85
T
M:
T
86
C
M:
A
107
G
M:
A
117
G
M:
C
119
T
M:
C
120
T
M:
T
122
C
M:
C
126
T
M:
A
128
G
M:
G
131
A
M:
T
137
C
M:
G
143
A
M:
A
146
G
M:
G
147
A
M:
C
153
A
M:
T
155
C
Show more
S
S:
A
50
G
S:
G
54
A
S:
G
67
A
S:
T
79
C
S:
A
81
G
S:
G
99
A
S:
A
109
G
S:
A
118
G
S:
C
166
T
S:
G
169
A
S:
T
172
C
S:
C
178
A
S:
T
182
C
S:
G
190
A
S:
G
196
A
S:
T
199
C
S:
C
208
T
S:
C
217
T
Show more
Deletions
None
Insertions
ins_L:58:T, ins_L:11917:CA, ins_L:12055:ACAATTTC, ins_L:12083:ACTATTC, ins_L:12108:TTTATTATTTCTGGGGTGTGGGGGGAWCG, ins_S:1584:C
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
9
V
GPC:
L
10
F
GPC:
E
19
K
GPC:
H
21
N
GPC:
S
23
P
GPC:
E
26
G
GPC:
R
28
E
GPC:
K
31
N
GPC:
D
33
H
GPC:
T
34
V
GPC:
G
39
D
GPC:
N
41
S
GPC:
P
42
Q
GPC:
S
44
P
GPC:
S
53
P
GPC:
I
54
V
GPC:
T
55
A
GPC:
L
56
P
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
83
A
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
301
G
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
NP:
K
428
R
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
N
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
N
236
S
RdRp:
K
275
R
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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