This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000P8QY.1

Display Name: China/LOC_000P8QY.1/1975
Moming, A.; Zhu, Q.; Bai, Y.; Jin, J.; Wu, Q.; Su, Z.; Tang, S.; Zhang, Y.; Shen, S.; Deng, F.

Submission details

Submission ID
OR047184.1.L/OR047164.1.M/OR047144.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 18:18:53 UTC
Date released
2025-03-11 18:23:22 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-11 18:18insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Wuhan Institute of Virology, Chinese Academy of Sciences

Alignment and QC metrics L

Completeness L
100.00%
Length L
12180
Total ambiguous nucs L
0
Total deleted nucs L
23
Total frame shifts L
0
Total inserted nucs L
95
Total SNPs L
1585
Total unknown nucs L
0

Alignment and QC metrics M

Completeness M
100.00%
Length M
5356
Total ambiguous nucs M
0
Total deleted nucs M
11
Total frame shifts M
0
Total inserted nucs M
1
Total SNPs M
595
Total unknown nucs M
0

Alignment and QC metrics S

Completeness S
100.00%
Length S
1673
Total ambiguous nucs S
0
Total deleted nucs S
2
Total frame shifts S
0
Total inserted nucs S
3
Total SNPs S
215
Total unknown nucs S
0

Sample details

Earliest release date
2023-08-21
Collection country
China
Collection date
1975
Collection date (lower bound)
1975-01-01
Collection date (upper bound)
1975-12-31

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession L
OR047184.1
INSDC accession M
OR047164.1
INSDC accession S
OR047144.1
NCBI release date
2023-08-21

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:C4G
  • L:G8T
  • L:A14T
  • L:A15T
  • L:C17T
  • L:C20T
  • L:C21T
  • L:A26G
  • L:C28T
  • L:A30T
  • L:G32C
  • L:A44G
  • L:G45A
  • L:G51C
  • L:G54C
  • L:T55C
  • L:G56A
  • L:G57C

    • M

  • M:C4T
  • M:T68C
  • M:G76A
  • M:A80G
  • M:C85T
  • M:A88G
  • M:C92T
  • M:A107G
  • M:A112G
  • M:A117G
  • M:C119T
  • M:C126T
  • M:A128G
  • M:G136A
  • M:A146G
  • M:G149A
  • M:C162A
  • M:A163G

    • S

  • S:T1G
  • S:C2G
  • S:T3A
  • S:T48C
  • S:G54A
  • S:A61G
  • S:C64T
  • S:G67A
  • S:G91A
  • S:G99A
  • S:A118G
  • S:C139T
  • S:C142T
  • S:T157C
  • S:C166T
  • S:C178A
  • S:T182C
  • S:C187A
    • Deletions
    L:23, L:66-76, L:11966, L:11967, L:11981, L:11982, L:12044-12047, L:12069-12071, M:5289-5299, S:1615, S:1633
    Insertions
    ins_S:1530:T, ins_S:0:C, ins_S:1577:A, ins_M:5168:G, ins_L:12106:TTATTTCCAGGGTGTGGGGG, ins_L:12061:CACAACT, ins_L:12027:CTCT, ins_L:11924:G, ins_L:12083:GCTATTT, ins_L:9:CTTGCAACACACTCTTT, ins_L:12096:GTTT, ins_L:49:C, ins_L:5:TGGG, ins_L:12063:CGG, ins_L:33:GGTAG, ins_L:12108:A, ins_L:12053:TT, ins_L:41:GATGGGC, ins_L:38:TCTCC, ins_L:11922:T, ins_L:11977:A, ins_L:11961:GT, ins_L:11973:A, ins_L:12101:AG

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:Y7C
  • GPC:I9V
  • GPC:C15Y
  • GPC:H24S
  • GPC:R28E
  • GPC:D33N
  • GPC:T34V
  • GPC:M35V
  • GPC:N41S
  • GPC:P42Q
  • GPC:S44P
  • GPC:P47L
  • GPC:A51T
  • GPC:S53P
  • GPC:I54V
  • GPC:P58S
  • GPC:L70P
  • GPC:G85E

    • NP

  • NP:R15K
  • NP:D44E
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:K208T
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I

    • RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:I45M
  • RdRp:H59Y
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
    • Deletions
    None
    Insertions
    None

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