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LOC_000P8QY.1
Download
Download FASTA
Download metadata TSV
Display Name: Bulgaria/LOC_000P8QY.1/2012
B. L. Hua,
F. E. Scholte,
V. Ohlendorf,
A. Kopp,
M. Marklewitz,
C. Drosten,
S. T. Nichol,
C. Spiropoulou,
S. Junglen &
E. Bergeron
Sample details
Collection date
2012
Collection date (lower bound)
2012-01-01
Collection date (upper bound)
2012-12-31
Earliest release date
2020-11-04
Collection country
Bulgaria
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-11-14 15:30
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Institute of Virology, Charite Universitatsmedizin Berlin
INSDC
NCBI release date
2020-11-04
INSDC accession L
MK299346.1
Host
Host taxon id
67831
Host name scientific
Rhipicephalus bursa
Alignment and QC metrics L
Length L
12129
Total SNPs L
2684
Total inserted nucs L
63
Total deleted nucs L
42
Total ambiguous nucs L
2
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.98%
Submission details
Submission ID
MK299346.1.L
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-11-14 15:30:32 UTC
Date released
2025-11-14 15:34:28 UTC
Files
Annotations
LOC_000P8QY.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
C
2
G
L:
T
3
G
L:
A
6
T
L:
T
12
G
L:
T
58
C
L:
T
62
G
L:
C
63
A
L:
T
65
C
L:
G
71
C
L:
C
76
A
L:
C
82
G
L:
A
91
G
L:
T
106
C
L:
A
113
C
L:
T
115
G
L:
T
131
A
L:
C
133
A
L:
C
136
T
Show more
Deletions
L:15-55, L:11935
Insertions
ins_L:0:G, ins_L:11969:ACCCAGCAT, ins_L:12017:GTCATGGTCAATTC, ins_L:12051:AGCTTACTCTGCCTCATAT, ins_L:12096:GCAAGGGTGTGGGGGGAACG
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
RdRp
RdRp:
D
2
E
RdRp:
I
13
L
RdRp:
S
19
T
RdRp:
N
24
S
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
L
64
I
RdRp:
E
66
K
RdRp:
S
67
T
RdRp:
R
70
Q
RdRp:
Q
74
L
RdRp:
E
75
D
RdRp:
R
80
K
RdRp:
K
91
Q
RdRp:
L
94
S
RdRp:
I
114
V
RdRp:
A
122
T
RdRp:
S
124
N
Show more
Deletions
None
Insertions
None
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