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LOC_000P8L6.1
Download
Download FASTA
Download metadata TSV
Display Name: India/LOC_000P8L6.1/2016
P. D. Yadav
Sample details
Collection date
2016
Collection date (lower bound)
2016-01-01
Collection date (upper bound)
2016-12-31
Earliest release date
2020-03-22
Collection country
India
Collection subdivision level 1
Vadodara District, Gujarat State
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-12-18 16:36
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Institute of Virology, Maximum Containment Laboratory
INSDC
NCBI release date
2020-03-22
INSDC accession L
MH396664.1
INSDC accession M
MH396665.1
INSDC accession S
MH396666.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12141
Total SNPs L
1642
Total inserted nucs L
47
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.88%
Total stop codons L
0
Alignment and QC metrics M
Length M
5402
Total SNPs M
1566
Total inserted nucs M
88
Total deleted nucs M
40
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
99.78%
Total stop codons M
0
Alignment and QC metrics S
Length S
1823
Total SNPs S
226
Total inserted nucs S
165
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
99.16%
Total stop codons S
0
Submission details
Submission ID
MH396664.1.L/MH396665.1.M/MH396666.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-18 16:36:21 UTC
Date released
2025-12-18 16:40:32 UTC
Lineage
Segment S Lineage
IV.1
Files
Annotations
LOC_000P8L6.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
G
23
T
L:
A
35
G
L:
G
43
T
L:
T
49
C
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
66
C
L:
T
68
C
L:
G
69
A
L:
G
71
C
L:
C
85
T
L:
G
88
A
L:
G
93
A
L:
A
109
G
L:
C
117
A
L:
A
124
G
L:
T
131
A
Show more
M
M:
T
3
G
M:
A
5
T
M:
A
6
C
M:
G
8
T
M:
A
9
C
M:
A
10
C
M:
A
11
G
M:
A
13
T
M:
T
16
G
M:
G
50
C
M:
A
51
G
M:
A
52
T
M:
G
56
T
M:
T
58
A
M:
T
59
A
M:
T
65
A
M:
C
66
T
M:
T
67
C
Show more
S
S:
A
50
G
S:
G
54
A
S:
G
67
A
S:
C
82
T
S:
G
99
A
S:
G
100
A
S:
A
118
G
S:
C
142
T
S:
C
154
A
S:
T
163
C
S:
C
166
T
S:
G
169
A
S:
T
172
C
S:
C
178
A
S:
T
182
C
S:
G
190
A
S:
T
199
C
S:
C
208
T
Show more
Deletions
M:18, M:297-305, M:628-630, M:678-689, M:5172-5186
Insertions
ins_L:58:T, ins_L:11917:CA, ins_L:12053:CTAC, ins_L:12086:CTACTATCCCAC, ins_L:12108:TTTATTATTTCTGGGGTGTGGGGGGAAC, ins_M:0:CACACCGATCACATCACTCTTTCCCTACACC, ins_M:236:CCGTCAACAGACACTGCC, ins_M:365:GTTGCCATTGTCCAAACACAAGAAACAGAAGCACCC, ins_M:5202:CA, ins_M:5248:C, ins_S:1672:ACTCGGCCTCAGTTAGGACGCCCTCCCCACTGTTACCAACATGAAGCTGCTCGCAGCAACTGTGCTACTCATCACCATCTGCAGCCTTGAAGGAGCTTTGGTTCGGAGACAGTC...
Show more
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
S
GPC:
H
2
M
GPC:
I
3
L
GPC:
S
4
L
GPC:
L
5
T
GPC:
M
6
N
GPC:
Y
7
F
GPC:
A
8
I
GPC:
I
9
L
GPC:
L
10
C
GPC:
C
11
Q
GPC:
Q
13
F
GPC:
L
14
W
GPC:
C
15
S
GPC:
L
17
S
GPC:
E
19
V
GPC:
H
21
S
GPC:
S
23
G
Show more
NP
NP:
R
15
K
NP:
S
52
G
NP:
V
83
A
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
301
G
NP:
A
307
V
NP:
Q
405
L
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
Show more
Deletions
GPC:176-210
Insertions
ins_GPC:77:ESSTDPSVTNKDTSP, ins_GPC:229:NTTGQTNPTTLVTSPKTQTIQGQQTTTPVT
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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