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LOC_000P8L6.1
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Download metadata TSV
Display Name: Bulgaria/LOC_000P8L6.1/2012
B. L. Hua,
F. E. Scholte,
V. Ohlendorf,
A. Kopp,
M. Marklewitz,
C. Drosten,
S. T. Nichol,
C. Spiropoulou,
S. Junglen &
E. Bergeron
Sample details
Collection date
2012
Collection date (lower bound)
2012-01-01
Collection date (upper bound)
2012-12-31
Earliest release date
2020-11-04
Collection country
Bulgaria
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-11-13 14:27
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Institute of Virology, Charite Universitatsmedizin Berlin
INSDC
NCBI release date
2020-11-04
INSDC accession S
MK299341.1
Host
Host taxon id
67831
Host name scientific
Rhipicephalus bursa
Alignment and QC metrics S
Length S
1680
Total SNPs S
333
Total inserted nucs S
11
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
99.82%
Submission details
Submission ID
MK299341.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-11-13 14:26:53 UTC
Date released
2025-11-13 14:30:46 UTC
Lineage
Segment S Lineage
VI
Files
Annotations
LOC_000P8L6.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
S
S:
T
23
C
S:
C
38
A
S:
T
49
A
S:
G
54
A
S:
A
61
G
S:
G
67
A
S:
T
79
C
S:
A
81
G
S:
T
88
C
S:
G
91
T
S:
A
92
C
S:
G
99
A
S:
A
118
G
S:
A
130
G
S:
C
154
T
S:
T
157
C
S:
C
166
T
S:
G
169
A
Show more
Deletions
None
Insertions
ins_S:1582:AAACG, ins_S:1624:ATTCTT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
N
9
S
NP:
E
12
D
NP:
M
13
L
NP:
R
15
K
NP:
S
39
N
NP:
F
48
Y
NP:
S
65
T
NP:
A
100
T
NP:
G
101
S
NP:
V
117
I
NP:
T
124
S
NP:
G
125
S
NP:
V
141
I
NP:
A
146
T
NP:
V
163
L
NP:
M
164
V
NP:
S
165
P
NP:
L
179
I
Show more
Deletions
None
Insertions
None
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