This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M279.1

USA/3766/2007-01-01
R. C. Christofferson, A. F. Roy & C. N. Mores

Louisiana State University, Pathobiological Sciences

Sample details

Collection date
2007
Earliest release date
2010-07-18
Sampling location
USA (Louisiana)
Isolate name
3766

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-15 08:07insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2010-07-18
NCBI update date
2016-07-25
INSDC accession

Submission details

Submission ID
HM538811.1
Submitting group
Date submitted
2026-06-15 08:07:19 UTC
Date released
2026-06-15 08:19:07 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
15
Length
1534 (13.9%)
Amino Acid Mutations from founder clade
  • NS3:T249P
  • NS3:I356T
  • NS4A:L24F
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G5217A
  • A5229G
  • G5280A
  • A5352G
  • G5523A
  • A5760G
  • C5832T
  • C6138T
  • C6238T
  • C6285T
  • C6324T
  • T6405C
  • C6426T
  • C6538T
  • T6540C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS4A

  • NS4A:L24F
Deletions
N/A
Insertions
N/A

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