This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M279.1

USA/LOC_000M279.1/2022-09-12
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2022-09-12
Earliest release date
2025-09-04
Sampling location
USA (Nebraska; Adams)
Isolate name
UNMC0015

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-27 15:36insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ310225.1
Submitting group
Date submitted
2026-02-27 15:36:10 UTC
Date released
2026-02-27 15:53:47 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
109
Length
10260 (93%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:G233S
  • NS2A:L38M
  • NS2A:R188K
  • NS2B:V75I
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • NS5:T897A
  • capsid:T109I
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:Y43H
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • T375C
  • C422T
  • C423T
  • C435T
  • C450T
  • T477C
  • T592C
  • A630G
  • C870T
  • C906T
  • C1329T
  • T1368C
  • T1442C
  • C1465T
  • C1470T
  • C1620T
  • T1656C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:G233S

NS2A

  • NS2A:L38M
  • NS2A:R188K

NS2B

  • NS2B:V75I

NS4B

  • NS4B:I240M

NS5

  • NS5:T897A

capsid

  • capsid:T109I

env

  • env:V159A
  • env:L167F

prM

  • prM:Y43H
Deletions
N/A
Insertions
N/A

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