This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M279.1

Italy/MAN-08/2009-01-01
G. Rossini, F. Carletti, V. Sambri & M. R. Capobianchi

National Institute for Infectious Diseases 'Lazzaro Spallanzani' IRCCS, Virology Laboratory

Sample details

Collection date
2009
Earliest release date
2011-02-22
Sampling location
Italy
Isolate name
MAN-08

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:37insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2011-02-22
NCBI update date
2016-07-25
INSDC accession

Host

Host

Submission details

Submission ID
HM641229.1
Submitting group
Date submitted
2026-05-22 14:37:36 UTC
Date released
2026-05-22 14:50:28 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
238
Length
5759 (52.2%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS3:T249P
  • NS4A:V85I
  • NS4A:P100S
  • NS4B:E249D
  • NS5:K177R
  • NS5:V258A
  • NS5:R422K
  • NS5:T641A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T4621C
  • C4674A
  • T4743C
  • T4746C
  • C4755T
  • C4779T
  • G4797A
  • C4821T
  • T4836C
  • T4864C
  • C4872T
  • G4893A
  • G4911A
  • T4917C
  • T4929C
  • G4932A
  • C4980T
  • T5052C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:T356I

NS4A

  • NS4A:A85I
  • NS4A:P100S

NS4B

  • NS4B:E249D

NS5

  • NS5:V258A
  • NS5:R422K
  • NS5:T641A
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue