This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M279.1

USA/4860/2007-01-01
R. C. Christofferson, A. F. Roy & C. N. Mores

Louisiana State University, Pathobiological Sciences

Sample details

Collection date
2007
Earliest release date
2010-07-18
Sampling location
USA (Louisiana)
Isolate name
4860

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-12 21:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2010-07-18
NCBI update date
2016-07-25
INSDC accession

Host

Host

Submission details

Submission ID
HM538816.1
Submitting group
Date submitted
2026-05-12 21:23:02 UTC
Date released
2026-05-12 21:38:23 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
7
Length
1534 (13.9%)
Amino Acid Mutations from founder clade
  • NS3:T249P
  • NS3:I356T
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G5280A
  • C5331T
  • T5691C
  • T5994C
  • C6138T
  • A6348G
  • C6426T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions
N/A
Deletions
N/A
Insertions
N/A

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