This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M23H.1

USA/M19433/2007-01-01
A. R. McMullen, F. J. May, L. Li, H. Guzman, R. Jr. Bueno, J. A. Dennett, R. B. Tesh, A. D. Barrett & A. D. T. Barrett

University of Texas Medical Branch

Sample details

Collection date
2007
Earliest release date
2011-07-14
Sampling location
USA (Texas)
Isolate name
M19433

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-18 12:54insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2011-07-14
NCBI update date
2011-07-14
INSDC accession

Host

Host

Submission details

Submission ID
JF415919.1
Submitting group
Date submitted
2026-03-18 12:54:10 UTC
Date released
2026-03-18 13:07:02 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
57
Length
11029 (100%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:S160A
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85T
  • NS4B:I240M
  • NS5:M91V
  • NS5:K177R
  • NS5:K314R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A459G
  • A630G
  • C660T
  • A831G
  • G1116A
  • A1320G
  • T1442C
  • C1465T
  • C1974T
  • C2034A
  • G2361A
  • C2466T
  • T2877C
  • C2961T
  • T3117C
  • T3399C
  • C3474T
  • C4000T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:S160A

NS4A

  • NS4A:A85T

NS4B

  • NS4B:I240M

NS5

  • NS5:M91V
  • NS5:K314R

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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