This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M23H.1

Display Name: Greece/LOC_000M23H.1/2018-09
Papa, A.; Papadopoulou, E.; Pappa, S.

Submission details

Submission ID
MK084830.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-07 13:34:12 UTC
Date released
2025-04-07 13:38:17 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-04-07 13:34insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Aristotle University of Thessaloniki, Dept. of Microbiology

Alignment and QC metrics

Completeness
3.63%
Length
331
Total ambiguous nucs
0
Total deleted nucs
69
Total frame shifts
0
Total inserted nucs
0
Total SNPs
64
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2019-01-02
Collection country
Greece
Collection date
2018-09
Collection date (lower bound)
2018-09-01
Collection date (upper bound)
2018-09-30
Isolate name
640h_Greece_2018

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
MK084830.1
NCBI release date
2019-01-02
NCBI update date
2019-01-02

Lineage

Lineage
2

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G5328T
  • G5343A
  • A5346C
  • C5349A
  • A5364G
  • T5367C
  • A5369G
  • T5382C
  • T5397C
  • T5403C
  • C5406T
  • C5412A
  • T5430A
  • G5436A
  • G5439C
  • G5442C
  • C5445T
  • C5451T
    • Deletions
    5248-5316
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS3

  • NS3:N253S
  • NS3:V283I
  • NS3:S302A
  • NS3:S331A
  • NS3:L336M
    • Deletions
    None
    Insertions
    None

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