This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M23H.1

USA/TX_AR12-1648/2012-06-05
B. R. Mann, A. R. McMullen, D. M. Swetnam, V. Salvato, M. Reyna, H. Guzman, R. Jr. Bueno, J. A. Dennett, R. B. Tesh, A. D. Barrett & A. D. T. Barrett

University of Texas Medical Branch, Pathology

Sample details

Collection date
2012-06-05
Earliest release date
2013-09-23
Sampling location
USA (Plano, Collin Co., Texas)
Isolate name
TX_AR12-1648

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2013-09-23
NCBI update date
2013-09-23
INSDC accession

Host

Host

Submission details

Submission ID
KC711058.1
Submitting group
Date submitted
2026-08-19 19:22:32 UTC
Date released
2026-08-19 19:38:27 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
72
Length
11016 (99.9%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:I308V
  • NS2A:T52I
  • NS2A:L95F
  • NS2B:A103V
  • NS3:T249P
  • NS3:S334T
  • NS3:I356T
  • NS4A:V85A
  • NS4B:S14I
  • NS4B:I240M
  • NS5:K177R
  • capsid:A119S
  • env:K93R
  • env:T123N
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • G451T
  • C522G
  • A630G
  • G876A
  • C1334A
  • A1401G
  • C1422T
  • T1442C
  • C1465T
  • A1500G
  • T1965C
  • T2089C
  • C2100T
  • C2371T
  • C2466T
  • C2925T
  • T3138C
  • T3156C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:I308V

NS2A

  • NS2A:T52I
  • NS2A:L95F

NS3

  • NS3:S334T

NS4B

  • NS4B:S14I
  • NS4B:I240M

capsid

  • capsid:A119S

env

  • env:T123N
  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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