This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M23H.1

USA/LOC_000M23H.1/2022-09-12
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2022-09-12
Earliest release date
2025-09-04
Sampling location
USA (Nebraska; Hall)
Isolate name
UNMC0017

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-27 15:36insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ310221.1
Submitting group
Date submitted
2026-02-27 15:36:10 UTC
Date released
2026-02-27 15:53:47 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
105
Length
10280 (93.2%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:I236V
  • NS2A:R188K
  • NS2B:I26V
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS3:S421N
  • NS4A:V85A
  • NS4B:I240M
  • NS5:R26K
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • T468C
  • A630G
  • T774C
  • G792A
  • A981T
  • T1092C
  • A1362G
  • G1440A
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • T1881C
  • C2304T
  • A2310C
  • C2466T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:I236V

NS2A

  • NS2A:R188K

NS2B

  • NS2B:I26V

NS3

  • NS3:S421N

NS4B

  • NS4B:I240M

NS5

  • NS5:R26K

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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