This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1GS.1

Display Name: USA/LOC_000M1GS.1/2023-08-31
Z. A. Barrand, C. L. Ridenour, A. N. Rivas, P. B. Hawkinson, B. K. Schmidt, M. Chan, H. Oltean, E. Keim, M. Gilbert, C. Curca, G. Mascarinas, C. Carlson, N. Flack, R. Mwashite, H. Aman, J. Lathi, G. Marovich, J. Che, M. Torres Alvarado, A. Black, P. Trinh & C. M. Hepp

Submission details

Submission ID
PV806633.1
Submitting group
Date submitted
2025-07-11 18:51:15 UTC
Date released
2025-07-11 18:59:57 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-11 18:51insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Translational Genomics Research Institute, TGen-North

INSDC

Bioproject accession
Biosample accession
INSDC accession
Raw reads accession
NCBI release date
2025-06-25
NCBI update date
2025-06-25

Alignment and QC metrics

Completeness
93.23%
Length
10302
Total ambiguous nucs
20
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
85
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2025-06-25
Collection subdivision level 1
WA
Collection country
USA
Collection date
2023-08-31
Collection date (lower bound)
2023-08-31
Collection date (upper bound)
2023-08-31
Isolate name
VCTR0010001682_WSDOH

Host

Host name scientific
Culex tarsalis
Host taxon id

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C600T
  • A630G
  • C660T
  • C732T
  • G792A
  • T1000C
  • C1077G
  • A1320G
  • A1333G
  • T1442C
  • C1465T
  • A1512G
  • C1572T
  • C1974T
  • T2103C
  • A2262G
  • T2320A
  • C2448T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS4A

  • NS4A:R41K
  • NS4A:A55T
  • NS4A:A85T

    • NS5

  • NS5:K4N
  • NS5:K314R
  • NS5:I544V
  • NS5:A547V

    • env

  • env:D37E
  • env:T123A
  • env:V159A
  • env:L167F
  • env:S452T
    • Deletions
    None
    Insertions
    None

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