This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1GS.1

USA/LOC_000M1GS.1/2019
T. O. C. Faleye, P. Skidmore, A. Elyaderani, S. Adhikari, N. Kaiser, A. Smith, A. Yanez, T. Perleberg, E. M. Driver, R. U. Halden, A. Varsani & M. Scotch

Arizona State University, Center for Environmental Health Engineering

Sample details

Collection date
2019
Earliest release date
2022-11-14
Sampling location
USA
Isolate name
NODE_6_WW-FT-Dec-2019-CVA10-3903nt-AZ

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-11 19:32insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-11-14
NCBI update date
2022-11-14
INSDC accession

Host

Host

Submission details

Submission ID
OP627843.1
Submitting group
Date submitted
2026-05-11 19:32:12 UTC
Date released
2026-05-11 19:56:51 UTC

Clade

Clade CV-A10
D

Genotype

Genotype
CV-A10

Alignment and QC

Total SNPs
859
Total inserted nucs
1
Length
3903 (52.7%)

Nucleotide mutations

Mutations called relative to the AY421767.1 reference

Substitutions

  • C582A
  • T604C
  • G605A
  • A606G
  • G607A
  • A608G
  • G609A
  • A610G
  • A616G
  • C648G
  • T649C
  • A661T
  • A662G
  • C668T
  • T670A
  • G679A
  • C682T
  • A685T
Deletions
N/A
Insertions

ins_573:T

Amino acid substitutions

Substitutions called relative to the AY421767.1 reference

Substitutions

2A

  • 2A:V12I
  • 2A:V29A
  • 2A:R68K
  • 2A:L123I

2B

  • 2B:S22A
  • 2B:N30T
  • 2B:H31Y
  • 2B:S94P
  • 2B:M95I

2C

  • 2C:N13S
  • 2C:K43R
  • 2C:D72N
  • 2C:I76M
  • 2C:F90Y
  • 2C:A103V
  • 2C:V108M

VP1

  • VP1:S13G
  • VP1:V16A
  • VP1:T21N
  • VP1:S22N
  • VP1:G23T
  • VP1:Q24I
  • VP1:D25N
  • VP1:N27E
  • VP1:T28S
  • VP1:G31N
  • VP1:A33T
  • VP1:M70V
  • VP1:T79S
  • VP1:I80V
  • VP1:S81N
  • VP1:L95M
  • VP1:T96S
  • VP1:V107T

VP2

  • VP2:L132I
  • VP2:S137A
  • VP2:N150T
  • VP2:A157T
  • VP2:S160T
  • VP2:N162H
  • VP2:V166I
  • VP2:S176A
  • VP2:I216V
  • VP2:V237I

VP3

  • VP3:L2I
  • VP3:T4A
  • VP3:E17D
  • VP3:S29T
  • VP3:S33I
  • VP3:R41H
  • VP3:D60E
  • VP3:N65S
  • VP3:A73S
  • VP3:N75S

VP4

  • VP4:S7T
  • VP4:R9K
  • VP4:S12T
  • VP4:S42T
Deletions
N/A
Insertions
N/A

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