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LOC_000M1GS.1
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Download FASTA
Download metadata TSV
USA/LOC_000M1GS.1/2009-04-08
N. Grubaugh,
S. Grewal,
N. L. Matteson,
K. Gangavarapu,
N. Gurfield &
K. Andersen
The Scripps Research Institute, Department of Immunology and Microbiology
Sample details
Collection date
2009-04-08
Earliest release date
2019-01-20
Sampling location
USA (La_Mesa,California)
Isolate name
WNV/bird/La_Mesa_CA_USA/2009-04-08/W046
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
MH507645.1
BioProject accession
PRJNA472981
Host
Host
red-shouldered hawk (Buteo lineatus)
Submission details
Submission ID
MH507645.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-01 18:03:48 UTC
Date released
2026-07-01 18:19:42 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000M1GS.1.embl
Alignment and QC
Total SNPs
76
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS2A:
T
29
I
NS2A:
H
119
Y
NS2A:
E
128
G
NS2B:
A
103
F
NS3:
T
249
L
NS3:
I
356
T
NS4A:
E
14
G
NS4B:
D
7
E
NS4B:
C
120
F
NS4B:
T
241
I
NS5:
K
76
R
NS5:
K
177
R
capsid:
K
104
R
env:
Y
59
C
env:
K
93
R
env:
T
126
I
env:
I
159
A
env:
V
431
I
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
T
339
C
A
407
G
A
630
G
C
660
T
A
1142
G
T
1442
C
C
1465
T
T
1821
C
C
2070
T
C
2199
T
G
2257
A
C
2466
T
G
2937
A
G
3237
A
C
3570
T
C
3611
T
C
3880
T
C
3898
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
NS2A
NS2A:
T
29
I
NS2A:
H
119
Y
NS2A:
E
128
G
NS2B
NS2B:
V
103
F
NS3
NS3:
P
249
L
NS4A
NS4A:
E
14
G
NS4A:
A
85
V
NS4B
NS4B:
D
7
E
NS4B:
C
120
F
NS4B:
T
241
I
NS5
NS5:
K
76
R
capsid
capsid:
K
104
R
env
env:
Y
59
C
env:
V
159
A
env:
L
167
F
env:
V
431
I
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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