This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1GS.1

USA/LOC_000M1GS.1/2008-01-01
M. R. Henn, R. M. Newman, D. Young, A. Ciota, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, S. Sykes, M. Koehrsen, D. Borenstein, R. Engels, E. Freedman, M. Gellesch, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date
2008
Earliest release date
2010-07-28
Sampling location
USA (New York)
Isolate name
WNV-1/US/BID-V4627/2008

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-25 19:19insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2010-07-28
NCBI update date
2010-07-28
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
HM488240.1
Submitting group
Date submitted
2026-06-25 19:19:18 UTC
Date released
2026-06-25 19:35:40 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
45
Length
10403 (94.3%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:T298A
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:R74Q
  • NS4A:V85A
  • NS4B:S15N
  • NS5:K177R
  • NS5:T336I
  • NS5:E836D
  • NS5:T897I
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A156G
  • C340T
  • T375C
  • A630G
  • C660T
  • T1407A
  • T1442C
  • C1465T
  • T1656C
  • A1920G
  • C2145T
  • C2466T
  • T2808C
  • C2973T
  • C2982T
  • A3361G
  • C4107T
  • A4146G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:T298A

NS4A

  • NS4A:R74Q

NS4B

  • NS4B:S15N

NS5

  • NS5:T336I
  • NS5:E836D
  • NS5:T897I

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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