This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1EW.1

Display Name: USA/LOC_000M1EW.1/2018-08-27
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2018-08-27
Collection date (lower bound)
2018-08-27
Collection date (upper bound)
2018-08-27
Earliest release date
2025-09-04
Collection country
USA
Collection subdivision level 1
Nebraska; Gage
Isolate name
UNMC0347

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-21 11:53insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
9997
Total SNPs
80
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
788
Total frame shifts
0
Completeness
83.50%
Total stop codons
0

Submission details

Submission ID
OZ310209.1
Submitting group
Date submitted
2025-11-21 11:53:20 UTC
Date released
2025-11-21 12:15:44 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • T375C
  • C381T
  • A407G
  • C435T
  • A630G
  • C732T
  • T891C
  • C969T
  • T1032C
  • C1041A
  • C1065T
  • C1089T
  • C1170T
  • C1260T
  • T1442C
  • C1465T
  • G1662A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:L123I
  • NS1:I236V
  • NS1:I275L

    • NS2A

  • NS2A:R188K

    • NS2B

  • NS2B:V120I

    • NS3

  • NS3:L586H

    • NS5

  • NS5:V49I

    • capsid

  • capsid:K104R

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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