This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1DY.1

USA/LOC_000M1DY.1/2010-07-28
N. Grubaugh, Y. Fang, N. L. Matteson, K. Gangavarapu, L. Coffey, C. Barker & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2010-07-28
Earliest release date
2019-01-20
Sampling location
USA (Bakersfield,California)
Isolate name
WNV/bird/Bakersfield_CA_USA/2010-07-28/W320

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-25 21:18insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
MH507873.1
Submitting group
Date submitted
2026-02-25 21:17:49 UTC
Date released
2026-02-25 21:34:32 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
64
Length
10302 (93.4%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C101T
  • A139G
  • C340T
  • T585C
  • A630G
  • C660T
  • T1206C
  • A1320G
  • T1442C
  • C1465T
  • C1632T
  • C1974T
  • A2217G
  • C2466T
  • G2661A
  • A2861G
  • A3049G
  • T3228C
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:N131S
  • NS1:I194V

    • NS2A

  • NS2A:R122H

    • NS4A

  • NS4A:A85T

    • NS4B

  • NS4B:K8R

    • NS5

  • NS5:N273S
  • NS5:K314R

    • capsid

  • capsid:S2F
  • capsid:N15D

    • env

  • env:V159A
  • env:L167F
    • Deletions
    N/A
    Insertions
    N/A

    Report an issue with this sequence or metadata

    Create GitHub issue