This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1DY.1

Display Name: USA/LOC_000M1DY.1/2020-09-25
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2020-09-25
Collection date (lower bound)
2020-09-25
Collection date (upper bound)
2020-09-25
Earliest release date
2025-09-04
Collection country
USA
Collection subdivision level 1
Nebraska; Dawes
Isolate name
UNMC0636

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-09 15:54insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10261
Total SNPs
84
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Frame shifts
[]
Completeness
93.04%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
OZ310195.1
Submitting group
Date submitted
2025-12-09 15:54:22 UTC
Date released
2025-12-09 16:18:27 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T348C
  • T609C
  • A630G
  • C663T
  • C807T
  • G1159A
  • A1401G
  • T1442C
  • C1465T
  • G1689A
  • T1923C
  • T1965C
  • A2097C
  • C2371T
  • C2466T
  • T3138C
  • C3414T
  • C3504T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS3

  • NS3:S334T

    • NS4B

  • NS4B:S14I

    • NS5

  • NS5:K127R
  • NS5:T641K

    • env

  • env:V65I
  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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