This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M17A.1

USA/LOC_000M17A.1/2014-08-15
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2014-08-15
Earliest release date
2025-09-04
Sampling location
USA (Nebraska; Red Willow)
Isolate name
UNMC0200

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-27 15:36insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ310189.1
Submitting group
Date submitted
2026-02-27 15:36:10 UTC
Date released
2026-02-27 15:53:47 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
96
Length
10260 (93%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:L169M
  • NS1:Q349R
  • NS2A:I39V
  • NS2A:V58I
  • NS2A:R188K
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • NS5:K314R
  • capsid:N73H
  • env:K93R
  • env:T126I
  • env:I159A
  • env:R479K
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A313C
  • C340T
  • C435T
  • C445T
  • A555G
  • A630G
  • C711T
  • C1278T
  • C1353T
  • C1371T
  • T1442C
  • C1465T
  • C1533T
  • T1584C
  • G1662A
  • C1750T
  • T1939C
  • C2109T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:L169M
  • NS1:Q349R

NS2A

  • NS2A:I39V
  • NS2A:V58I
  • NS2A:R188K

NS4B

  • NS4B:I240M

NS5

  • NS5:K314R

capsid

  • capsid:N73H

env

  • env:V159A
  • env:L167F
  • env:R479K
Deletions
N/A
Insertions
N/A

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