This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M17A.1

China/LOC_000M17A.1/2011-06
Y. Wang, G. Zou, A. Xia, X. Wang, J. Cai, Q. Gao, S. Yuan, G. He, S. Zhang, M. Zeng & R. Altmeyer

Institut Pasteur of Shanghai, Anti-Infective Unit

Sample details

Collection date
2011-06
Earliest release date
2014-04-16
Sampling location
China
Isolate name
SHC082/CHN/2011

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2014-04-16
NCBI update date
2015-07-08
INSDC accession

Host

Host

Submission details

Submission ID
KJ188641.1
Submitting group
Date submitted
2026-10-02 10:14:37 UTC
Date released
2026-10-02 10:19:43 UTC

Clade

Clade EV-A71
C4

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
161
Length
891 (12%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions
  • G2441A
  • G2442A
  • C2444T
  • A2447G
  • G2459A
  • G2465A
  • C2468T
  • T2471C
  • T2483C
  • T2489C
  • A2491G
  • G2492A
  • C2498T
  • C2501T
  • C2503A
  • A2504C
  • T2508C
  • T2513A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:D2N
  • VP1:K18R
  • VP1:P22H
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282S
  • VP1:T289A
Deletions
N/A
Insertions
N/A

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