This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M10Q.1

Display Name: Hungary/LOC_000M10Q.1/2023
A. Nagy & K. Kerenyi

Sample details

Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Earliest release date
2024-01-30
Collection country
Hungary
Collection subdivision level 1
Iregszemcse
Isolate name
3609_NS3_WNV_Hungary_2023

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-10 14:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Center for Public Health and Pharmacy, National Reference Laboratory for Viral Zoonoses

INSDC

NCBI release date
2024-01-30
NCBI update date
2024-01-30
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
423
Total SNPs
82
Total inserted nucs
0
Total deleted nucs
107
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
1
Frame shifts
[{'cdsName': 'NS3', 'nucRel': {'begin': 608, 'end': 1857}, 'nucAbs': [{'begin': 5219, 'end': 6468}], 'codon': {'begin': 203, 'end': 619}, 'gapsLeading': {'begin': 167, 'end': 203}, 'gapsTrailing': {'begin': 619, 'end': 619}}]
Completeness
4.81%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
PP197723.1
Submitting group
Date submitted
2025-12-10 13:59:55 UTC
Date released
2025-12-10 14:17:43 UTC

Lineage

Lineage
2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G5112A
  • T5223A
  • G5226T
  • A5229C
  • G5232A
  • A5241G
  • A5250C
  • G5255A
  • C5260T
  • A5265G
  • A5268G
  • C5271T
  • G5274A
  • A5277G
  • G5280A
  • A5283C
  • T5292C
  • G5295T
    • Deletions
    5113-5219
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions
    Deletions
    NS3:168-203
    Insertions
    None

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