This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M10Q.1

USA/LOC_000M10Q.1/2003-01-01
P. M. Armstrong, C. R. Vossbrinck, T. G. Andreadis, J. F. Anderson, K. N. Pesko, R. M. Newman, N. J. Lennon, B. W. Birren, G. D. Ebel, M. R. Henn, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date
2003
Earliest release date
2010-07-28
Sampling location
USA (Connecticut)
Isolate name
WNV-1/US/BID-V4619/2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-12 21:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2010-07-28
NCBI update date
2011-08-11
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
HM488235.1
Submitting group
Date submitted
2026-05-12 21:23:02 UTC
Date released
2026-05-12 21:38:23 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
82
Total inserted nucs
50
Total deleted nucs
171
Length
10908 (100%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • env:I474V
  • prM:M144I
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C660T
  • G897A
  • T1442C
  • C1465T
  • A2386G
  • C2466T
  • G4083A
  • C4107T
  • A4146G
  • T4398C
  • C4803T
  • C4935T
  • C5082T
  • G5280A
  • T5826C
  • C6138T
  • C6183T
Deletions

10651-10654, 10676-10699, 10714-10722, 10731-10755, 10761-10778, 10795-10797, 10818, 10819, 10827-10829, 10846-10851, 10859-10862, 10890-10892, 10902-10906, 10917, 10918, 10926-10935, 10942-10947, 10953-10964, 10969-10991, 11005-11016
Insertions

ins_10661:GCGAAGTGAT, ins_10804:C, ins_10807:ACCGTCTC, ins_10836:ATC, ins_10840:TAA, ins_10876:AGGACC, ins_10897:AT, ins_11026:CGCGAAGTGA, ins_11029:ATGTAAG

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:V159A
  • env:L167F
  • env:I474V

prM

  • prM:M144I
Deletions
N/A
Insertions
N/A

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