This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M0PC.1

USA/UNMC0633/2020-09-18
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2020-09-18
Earliest release date
2025-09-03
Sampling location
USA (Nebraska; Garfield)
Isolate name
UNMC0633

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2025-09-03
NCBI update date
2025-10-21
INSDC accession
BioProject accession
BioSample accession
Raw reads accession

Host

Host

Submission details

Submission ID
OZ310050.1
Submitting group
Date submitted
2026-08-31 11:58:35 UTC
Date released
2026-08-31 12:19:19 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
105
Length
10261 (93%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2B:I26V
  • NS2B:A103V
  • NS2B:I107V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • NS5:A860T
  • env:K93R
  • env:T126I
  • env:I159A
  • env:M240I
  • prM:V19I
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C340T
  • C435T
  • G520A
  • A630G
  • C732T
  • A939G
  • A981T
  • C1047A
  • C1119T
  • T1143C
  • C1371T
  • T1442C
  • C1465T
  • G1662A
  • G1686A
  • C1750T
  • C2070T
  • C2109T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS2B

  • NS2B:I26V
  • NS2B:I107V

NS4B

  • NS4B:I240M

NS5

  • NS5:A860T

env

  • env:V159A
  • env:L167F
  • env:M240I

prM

  • prM:V19I
Deletions
N/A
Insertions
N/A

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