This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M0MG.1

USA/UNMC0730/2023-09-19
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2023-09-19
Earliest release date
2025-09-04
Sampling location
USA (Nebraska; Douglas)
Isolate name
UNMC0730

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-10 17:57insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ310169.1
Submitting group
Date submitted
2026-03-10 17:57:25 UTC
Date released
2026-03-10 18:18:22 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
114
Length
10260 (93%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:I236V
  • NS2A:R188K
  • NS2B:A103V
  • NS3:D141N
  • NS3:A177V
  • NS3:T249P
  • NS3:I356T
  • NS3:S467L
  • NS4A:V85A
  • NS4B:V112I
  • NS4B:I240M
  • NS5:T25I
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:F155L
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • T513C
  • A630G
  • G741A
  • T928C
  • C1050T
  • C1242T
  • T1368C
  • T1442C
  • C1465T
  • G1662A
  • G1680A
  • C1750T
  • C2109T
  • C2304T
  • C2316T
  • T2400C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:I236V

NS2A

  • NS2A:R188K

NS3

  • NS3:D141N
  • NS3:A177V
  • NS3:S467L

NS4B

  • NS4B:V112I
  • NS4B:I240M

NS5

  • NS5:T25I

env

  • env:V159A
  • env:L167F

prM

  • prM:F155L
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue