This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M0EX.1

USA/UNMC0055/2012-08-15
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2012-08-15
Earliest release date
2025-09-03
Sampling location
USA (Nebraska; Chase)
Isolate name
UNMC0055

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-10 15:57insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-03
NCBI update date
2025-10-21
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ310162.1
Submitting group
Date submitted
2026-04-10 15:57:07 UTC
Date released
2026-04-10 16:27:52 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
70
Length
10260 (93%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:I236V
  • NS2A:R188K
  • NS2B:A103V
  • NS2B:V120I
  • NS3:T249P
  • NS3:I356T
  • NS3:I407V
  • NS4A:V85A
  • NS5:V49I
  • NS5:K177R
  • NS5:K314E
  • capsid:K104R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C204T
  • C340T
  • A407G
  • C435T
  • A630G
  • C708T
  • C969T
  • C1065T
  • C1170T
  • T1442C
  • C1465T
  • G1662A
  • C1707T
  • C1750T
  • C2304T
  • C2466T
  • T2898C
  • A3175G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:I236V

NS2A

  • NS2A:R188K

NS2B

  • NS2B:V120I

NS3

  • NS3:I407V

NS5

  • NS5:V49I
  • NS5:K314E

capsid

  • capsid:K104R

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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