This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LX6J.1

unknown/LOC_000LX6J.1/unknown
M. T. Parra, J. M. D. Anton & I. J. D. Rodriguez

Sample details

Earliest release date
2025-02-28

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2025-02-28
NCBI update date
2025-02-28
INSDC accession

Submission details

Submission ID
PH267346.1
Submitting group
Date submitted
2026-09-04 15:28:51 UTC
Date released
2026-09-04 15:50:00 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
12
Length
11029 (100%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:C168R
  • NS2B:A103V
  • NS3:Q110R
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159V
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C450T
  • A630G
  • C1465T
  • T4027C
  • C4107T
  • A4940G
  • G5280A
  • T6405C
  • T7011C
  • T8235C
  • C10338T
  • C10624T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:C168R

NS3

  • NS3:Q110R

env

  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue