This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LX4N.1

unknown/LOC_000LX4N.1/2006-01-01
P. M. Armstrong, C. R. Vossbrinck, T. G. Andreadis, J. F. Anderson, K. N. Pesko, R. M. Newman, N. J. Lennon, B. W. Birren, G. D. Ebel, M. R. Henn, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date
2006
Earliest release date
2010-09-22
Isolate name
WNV-1/CTFS/BID-V4112/2006

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:37insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2010-09-22
NCBI update date
2011-08-08
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
HM488123.1
Submitting group
Date submitted
2026-05-22 14:37:36 UTC
Date released
2026-05-22 14:50:28 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
35
Length
10449 (94.7%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:N351D
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • NS5:A567V
  • env:K93R
  • env:T126I
  • env:I159A
  • env:T314A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C660T
  • C1164T
  • T1407C
  • T1442C
  • C1465T
  • A1906G
  • C2466T
  • C3159T
  • C3177T
  • A3520G
  • T3633C
  • T3717C
  • C4107T
  • A4146G
  • C4269T
  • T4746C
  • C4803T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:N351D

NS5

  • NS5:A567V

env

  • env:V159A
  • env:L167F
  • env:T314A
Deletions
N/A
Insertions
N/A

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