This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LX4N.1

USA/CVB2022/2022-09-21
D. C. Price

Rutgers University

Sample details

Collection date
2022-09-21
Earliest release date
2026-02-16
Sampling location
USA (NJ)
Isolate name
CVB2022

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2026-02-16
NCBI update date
2026-02-16
INSDC accession

Host

Host

Submission details

Submission ID
PX597329.1
Submitting group
Date submitted
2026-11-06 16:57:01 UTC
Date released
2026-11-06 17:10:27 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
106
Length
10974 (99.5%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:T52I
  • NS2A:L95F
  • NS2B:A103V
  • NS3:T249P
  • NS3:S334T
  • NS3:I356T
  • NS4A:V85A
  • NS4B:S14I
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:M39L
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T348C
  • C519T
  • A580T
  • T609C
  • A630G
  • C783T
  • C807T
  • C990T
  • A1401G
  • T1442C
  • C1465T
  • T1872C
  • T1923C
  • T1965C
  • C1974T
  • A2097C
  • C2371T
  • C2466T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:T52I
  • NS2A:L95F

NS3

  • NS3:S334T

NS4B

  • NS4B:S14I

env

  • env:V159A
  • env:L167F

prM

  • prM:M39L
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue