This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LX1U.1

USA/LOC_000LX1U.1/2009-06-18
N. Grubaugh, Y. Fang, N. L. Matteson, K. Gangavarapu, L. Coffey, C. Barker & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2009-06-18
Earliest release date
2019-01-20
Sampling location
USA (Bakersfield,California)
Isolate name
WNV/bird/Bakersfield_CA_USA/2009-06-18/W133

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-09 12:53insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
MH507715.1
Submitting group
Date submitted
2026-03-09 12:53:36 UTC
Date released
2026-03-09 13:06:01 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
62
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:N131S
  • NS1:I194V
  • NS2A:R122H
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85T
  • NS4B:K8R
  • NS4B:I245V
  • NS5:K177R
  • NS5:N273S
  • NS5:K314R
  • capsid:S2F
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C101T
  • C340T
  • T585C
  • A630G
  • C660T
  • T1206C
  • A1218G
  • A1320G
  • T1442C
  • C1465T
  • C1632T
  • C1974T
  • A2217G
  • G2361A
  • C2466T
  • G2661A
  • A2861G
  • A3049G
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:N131S
  • NS1:I194V

NS2A

  • NS2A:R122H

NS4A

  • NS4A:A85T

NS4B

  • NS4B:K8R
  • NS4B:I245V

NS5

  • NS5:N273S
  • NS5:K314R

capsid

  • capsid:S2F

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue