This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LX1U.1

unknown/LOC_000LX1U.1/unknown
R. Shattock, P. Mckay, M. Watson & E. Harper

Sample details

Earliest release date
2024-11-15

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2024-11-15
NCBI update date
2024-11-15
INSDC accession

Submission details

Submission ID
PF321541.1
Submitting group
Date submitted
2026-08-31 11:58:35 UTC
Date released
2026-08-31 12:19:19 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
178
Total inserted nucs
6
Total deleted nucs
5
Total frame shifts
2
Frame shifts
NS4B:31-33(nt:7006-7014),NS4B:255(nt:7677-7680)
Length
768 (6.95%)
Amino Acid Mutations from founder clade
  • NS4B:S14G
  • NS4B:K20R
  • NS4B:A100V
  • NS4B:A149V
  • NS4B:M177I
  • NS4B:T241M
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C6918T
  • G6921A
  • T6927C
  • A6933G
  • T6936C
  • G6947A
  • A6954T
  • A6955G
  • T6960C
  • T6961C
  • T6966G
  • A6972C
  • A6975G
  • A6976C
  • T6977C
  • T6978A
  • G6981A
  • T6983C
Deletions
6994-6996, 7675, 7676
Insertions
ins_7005:GTTGA, ins_7014:A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS4B

  • NS4B:S11N
  • NS4B:S14G
  • NS4B:F17L
  • NS4B:Q19H
  • NS4B:I21P
  • NS4B:A100V
  • NS4B:T116A
  • NS4B:A149V
  • NS4B:I168V
  • NS4B:M177I
  • NS4B:L183M
  • NS4B:K193R
  • NS4B:I202T
  • NS4B:T241M
Deletions

NS4B

NS4B:28-30, NS4B:254
Insertions

NS4B

ins_NS4B:22:ARETTLG

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