LOC_000LWX2.1

USA/LOC_000LWX2.1/2005-01-01

P. M. Armstrong, C. R. Vossbrinck, T. G. Andreadis, J. F. Anderson, K. N. Pesko, R. M. Newman, N. J. Lennon, B. W. Birren, G. D. Ebel, M. R. Henn, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date

2005

Earliest release date

2010-08-14

Sampling location

USA (Connecticut)

Isolate name

WNV-1/US/BID-V4104/2005

Data use terms

Changed	User	Data use terms
2026-05-22 14:37	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2010-08-14

NCBI update date

2011-08-11

INSDC accession

HM488116.1

BioProject accession

PRJNA31237

Host

common house mosquito; northern house mosquito (Culex pipiens)

Submission details

Submission ID

HM488116.1

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-05-22 14:37:36 UTC

Date released

2026-05-22 14:50:28 UTC

Lineage

Files

Annotations

LOC_000LWX2.1.embl

Alignment and QC

Total SNPs

Total inserted nucs

Total deleted nucs

139

Length

10904 (99.6%)

Amino Acid Mutations from founder clade

2K:V9M
2K:L15M
NS1:T209A
NS2B:A103V
NS3:T249P
NS3:I356T
NS4A:V85A
NS4B:T241A
NS5:K177R
env:K93R
env:T126I
env:I159A

Variant

True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

A1C
G2T
T570C
A630G
T1442C
C1465T
T1983C
T2148C
C2466T
C2958T
A3094G
C4107T
A4146G
G4389A
C4527T
C4803T
C4827T
G5280A

Deletions

7, 10633-10638, 10744-10756, 10786-10794, 10804-10817, 10846-10854, 10861-10890, 10895-10915, 10925-10937, 10951-10965, 10970-10977

Insertions

ins_0:TCCCCTGTGTGCCTTGCCTATCCCCTGTTGCGTGT, ins_10649:TAGGC, ins_10682:A, ins_10686:G, ins_10690:G, ins_10693:AG, ins_10703:G, ins_10706:G, ins_10764:TGAT, ins_10768:GTA, ins_10826:T

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference