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LOC_000LWLQ.1
Download
Download FASTA
Download metadata TSV
USA/LOC_000LWLQ.1/2016-01-27
N. Grubaugh,
S. Grewal,
N. L. Matteson,
K. Gangavarapu,
N. Gurfield &
K. Andersen
The Scripps Research Institute, Department of Immunology and Microbiology
Sample details
Collection date
2016-01-27
Earliest release date
2019-01-20
Sampling location
USA (Escondido,California)
Isolate name
WNV/bird/Escondido_CA_USA/2016-01-27/W110
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-09 12:53
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
MH507700.1
Bioproject accession
PRJNA472981
Host
Host
Corvus brachyrhynchos
Submission details
Submission ID
MH507700.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-09 12:53:36 UTC
Date released
2026-03-09 13:06:01 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000LWLQ.1.embl
Alignment and QC
Total SNPs
107
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS1:
M
29
I
NS1:
I
113
V
NS1:
L
169
M
NS2A:
L
95
F
NS2B:
A
103
F
NS3:
T
249
P
NS3:
I
356
T
NS4A:
V
85
A
NS4B:
C
120
F
NS4B:
L
244
I
NS5:
K
177
R
capsid:
I
111
S
capsid:
M
114
L
env:
K
93
R
env:
T
126
V
env:
I
159
A
env:
V
431
I
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
216
T
T
428
G
A
436
C
A
630
G
C
660
T
T
699
C
T
1032
C
C
1134
T
A
1342
G
T
1357
C
T
1442
C
C
1465
T
A
1491
G
A
1683
G
G
1743
A
T
1881
C
T
1908
C
C
1986
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
NS1
NS1:
M
29
I
NS1:
I
113
V
NS1:
L
169
M
NS2A
NS2A:
L
95
F
NS2B
NS2B:
V
103
F
NS4B
NS4B:
C
120
F
NS4B:
L
244
I
capsid
capsid:
I
111
S
capsid:
M
114
L
env
env:
I
126
V
env:
V
159
A
env:
L
167
F
env:
V
431
I
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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