This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LWLQ.1

USA/LOC_000LWLQ.1/2023-08-21
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2023-08-21
Earliest release date
2025-09-04
Sampling location
USA (Nebraska; Box Butte)
Isolate name
UNMC0584

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-03 13:47insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ310203.1
Submitting group
Date submitted
2026-03-03 13:47:06 UTC
Date released
2026-03-03 14:05:52 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
110
Length
10260 (93%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:T50S
  • NS2A:T52I
  • NS2A:L95F
  • NS2A:H119Y
  • NS2B:A103V
  • NS3:T249P
  • NS3:S334T
  • NS3:I356T
  • NS4A:V85A
  • NS4B:S14I
  • NS5:K177R
  • NS5:T276I
  • NS5:R422K
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C687T
  • C693T
  • C990T
  • T1000C
  • T1368C
  • A1401G
  • T1442C
  • C1465T
  • G1530A
  • T1855C
  • C1893T
  • T1965C
  • T2002C
  • A2097C
  • C2466T
  • C2593T
  • T2730C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:T50S
  • NS2A:T52I
  • NS2A:L95F
  • NS2A:H119Y

NS3

  • NS3:S334T

NS4B

  • NS4B:S14I

NS5

  • NS5:T276I
  • NS5:R422K

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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