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LOC_000LWLQ.1
Download
Download FASTA
Download metadata TSV
China/LOC_000LWLQ.1/2011-06-02
H. Zhang &
S. Ma
Institute of Medical Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, Medical Genetics
Sample details
Collection date
2011-06-02
Earliest release date
2019-05-28
Sampling location
China
Isolate name
R5/YN/CHN/2011
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2019-05-28
NCBI update date
2019-05-28
INSDC accession
KY425530.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KY425530.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-17 10:32:30 UTC
Date released
2026-07-17 10:38:28 UTC
Clade
Clade CV-A16
B1b
Genotype
Genotype
CV-A16
Alignment and QC
Total SNPs
1566
Total inserted nucs
4
Total deleted nucs
5
Length
7412 (100%)
Nucleotide mutations
Mutations called relative to the
U05876.1
reference
Substitutions
A
22
T
T
54
A
A
63
G
A
67
G
C
71
T
G
89
A
T
90
A
C
96
T
C
100
T
T
103
G
T
107
C
A
119
T
C
123
T
C
126
A
T
127
A
T
130
C
T
131
A
G
137
A
Show more
Deletions
128, 583, 702-704
Insertions
ins_576:TT, ins_7341:T, ins_7413:A
Amino acid substitutions
Substitutions called relative to the
U05876.1
reference
Substitutions
2A
2A:
D
57
N
2A:
R
68
K
2A:
S
77
T
2B
2B:
T
15
M
2B:
I
47
V
2B:
I
50
V
2B:
I
57
V
2B:
L
91
F
2B:
A
96
V
2C
2C:
N
23
S
2C:
T
96
V
2C:
I
228
V
2C:
R
268
K
2C:
S
271
T
2C:
V
303
I
2C:
Y
318
S
3A
3A:
S
11
N
3A:
D
39
E
3A:
P
48
S
3A:
V
51
L
3A:
I
61
V
3B
3B:
T
10
A
3B:
I
15
V
3C
3C:
V
36
I
3C:
I
56
V
3C:
I
86
V
3C:
N
93
T
3C:
S
95
T
3C:
A
96
G
3C:
V
157
I
3C:
S
177
G
3D
3D:
V
6
M
3D:
P
8
S
3D:
V
29
A
3D:
H
31
Y
3D:
N
37
S
3D:
H
44
T
3D:
R
46
K
3D:
I
74
A
3D:
K
75
T
3D:
E
76
Q
3D:
T
92
I
3D:
S
93
N
3D:
Q
94
K
3D:
N
106
Y
3D:
I
125
V
3D:
T
134
V
3D:
V
138
T
3D:
S
139
T
Show more
VP1
VP1:
G
3
P
VP1:
A
11
T
VP1:
T
13
N
VP1:
S
14
N
VP1:
R
15
Q
VP1:
G
17
N
VP1:
A
19
S
VP1:
S
22
A
VP1:
E
26
L
VP1:
N
33
E
VP1:
E
36
S
VP1:
L
43
V
VP1:
Q
59
S
VP1:
E
61
K
VP1:
T
79
A
VP1:
M
119
L
VP1:
A
139
V
VP1:
I
179
V
Show more
VP2
VP2:
I
32
V
VP2:
K
43
P
VP2:
A
45
T
VP2:
I
126
V
VP2:
D
139
T
VP2:
V
149
A
VP2:
N
162
H
VP2:
V
170
I
VP2:
I
215
L
VP2:
V
217
I
VP2:
A
226
T
VP2:
I
252
V
VP3
VP3:
A
33
P
VP3:
R
41
H
VP3:
Q
59
K
VP3:
S
60
T
VP3:
V
85
A
VP3:
N
93
D
VP3:
G
141
N
VP3:
L
147
I
VP3:
I
169
V
VP3:
K
182
R
VP3:
D
183
A
VP3:
T
193
I
VP3:
S
238
T
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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