This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LWJU.1

France/LOC_000LWJU.1/2021-09
K. S. Benschop, J. Albert, A. Anton, C. Andres, M. Aranzamendi, B. Armannsdottir, J. L. Bailly, F. Baldanti, G. E. Baldvinsdottir, S. Beard, N. Berginc, S. Bottcher, S. Blomqvist, L. Bubba, C. Calvo, M. Cabrerizo, A. Cavallero, C. Celma, F. Ceriotti, I. Costa, S. Cottrell, M. Del Cuerpo, J. Dean, J. L. Dembinski, ..., M. Bisseux

CHU Clermont-Ferrand, Centre National de reference des enterovirus et parechovirus

Sample details

Collection date
2021-09
Earliest release date
2022-09-06
Sampling location
France (ARA)
Isolate name
CF_535770_FRA_2021

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2022-09-06
NCBI update date
2022-09-06
INSDC accession

Host

Host

Submission details

Submission ID
OP267494.1
Submitting group
Date submitted
2026-08-26 19:33:53 UTC
Date released
2026-08-26 19:45:27 UTC

Clade

Clade EV-D68
B3

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
498
Total inserted nucs
1
Total deleted nucs
36
Length
7230 (98.6%)

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions
  • T11C
  • C12T
  • T28C
  • T61C
  • C62T
  • A88T
  • T89C
  • C95T
  • C101T
  • C106T
  • A119G
  • C122T
  • A126G
  • A140G
  • T158C
  • T172C
  • G197A
  • C203T
Deletions
619, 679-701, 716-727
Insertions
ins_27:T

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

2A

  • 2A:I22T
  • 2A:V37I
  • 2A:R65K
  • 2A:N84S
  • 2A:A99V
  • 2A:V144A

2B

  • 2B:I64V

2C

  • 2C:K58N
  • 2C:R72Q
  • 2C:S98A
  • 2C:A102M
  • 2C:N273G
  • 2C:T275A
  • 2C:T277V
  • 2C:V304I

3A

  • 3A:A13T
  • 3A:V53L

3C

  • 3C:I46T
  • 3C:N50D
  • 3C:C93Y

3D

  • 3D:N6S
  • 3D:M11V
  • 3D:S41P
  • 3D:N95S
  • 3D:E101D
  • 3D:Q130H
  • 3D:T200I
  • 3D:V277I
  • 3D:I278V
  • 3D:K307R
  • 3D:I360V

VP1

  • VP1:S1I
  • VP1:N2D
  • VP1:V13I
  • VP1:G76S
  • VP1:K84R
  • VP1:N90D
  • VP1:A92T
  • VP1:S95T
  • VP1:G97Q
  • VP1:H99D
  • VP1:K110R
  • VP1:N142S
  • VP1:D144N
  • VP1:S145N
  • VP1:M148V
  • VP1:K168E
  • VP1:E169K
  • VP1:N218T

VP2

  • VP2:S59A
  • VP2:S73A
  • VP2:N74T
  • VP2:Y98H
  • VP2:D136N
  • VP2:N144D
  • VP2:R151A
  • VP2:I167L
  • VP2:V195A
  • VP2:V211I
  • VP2:V225M

VP3

  • VP3:I40V
  • VP3:M46V
  • VP3:I47V
  • VP3:D59E
  • VP3:G60S
  • VP3:N62V
  • VP3:R68K
  • VP3:V73A
  • VP3:Q74L
  • VP3:A75T
  • VP3:L77V
  • VP3:S180N

VP4

  • VP4:I18V
Deletions
N/A
Insertions
N/A

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