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LOC_000LWC7.1
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Download FASTA
Download metadata TSV
USA/LOC_000LWC7.1/2017-10-10
A. Fall,
M. Forman,
C. Morris,
V. Gniazdowski,
C. H. Luo,
A. Hanlon,
H. H. Miller,
Y. Bergman &
H. H. Mostafa
Johns Hopkins School of Medicine, Molecular Virology
Sample details
Collection date
2017-10-10
Earliest release date
2023-01-28
Sampling location
USA
Isolate name
JH-876/2017
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-01-28
NCBI update date
2023-01-28
INSDC accession
OP207969.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
OP207969.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-26 19:33:53 UTC
Date released
2026-08-26 19:45:27 UTC
Clade
Clade EV-A71
C4
Genotype
Genotype
EV-A71
Alignment and QC
Total SNPs
849
Total inserted nucs
6
Total deleted nucs
8
Length
4483 (60.5%)
Nucleotide mutations
Mutations called relative to the
U22521.1
reference
Substitutions
A
76
G
T
95
C
T
99
A
C
106
A
A
119
T
C
126
T
T
138
C
T
142
C
G
143
A
G
145
A
A
148
G
T
149
C
A
150
T
C
156
T
C
158
T
A
159
G
T
163
C
A
180
T
Show more
Deletions
101-103, 121, 122, 694, 707, 743
Insertions
ins_128:C, ins_701:CT, ins_738:GCT
Amino acid substitutions
Substitutions called relative to the
U22521.1
reference
Substitutions
2A
2A:
T
26
N
2A:
R
68
M
2A:
V
82
I
2A:
F
83
Y
2A:
E
102
Q
2A:
S
129
N
2B
2B:
R
11
D
2B:
N
30
T
2B:
H
31
Y
2B:
V
47
I
2B:
S
85
A
2B:
M
95
I
2C
2C:
I
21
V
2C:
F
22
S
2C:
I
37
V
2C:
K
41
R
2C:
P
54
S
2C:
V
60
I
2C:
A
75
V
2C:
I
81
S
2C:
R
151
H
VP1
VP1:
K
18
R
VP1:
P
22
H
VP1:
P
30
Q
VP1:
D
31
N
VP1:
K
98
E
VP1:
R
145
E
VP1:
D
167
E
VP1:
P
172
Q
VP1:
S
183
L
VP1:
S
240
T
VP1:
E
244
K
VP1:
S
246
P
VP1:
I
249
V
VP1:
S
275
A
VP1:
D
282
N
VP1:
T
289
A
VP2
VP2:
N
45
S
VP2:
P
94
Q
VP2:
N
143
D
VP2:
S
144
T
VP2:
M
198
I
VP2:
T
200
A
VP2:
F
224
Y
VP3
VP3:
D
93
N
VP3:
M
100
L
VP3:
T
232
A
VP3:
E
237
Q
VP3:
A
239
G
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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