This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LWAB.1

USA/LOC_000LWAB.1/2017-10-19
N. Grubaugh, S. Grewal, N. L. Matteson, K. Gangavarapu, N. Gurfield & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2017-10-19
Earliest release date
2019-01-20
Sampling location
USA (Imperial_Beach,California)
Isolate name
WNV/bird/Imperial_Beach_CA_USA/2017-10-19/W097

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-15 20:25insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
MH507688.1
Submitting group
Date submitted
2026-03-15 20:25:42 UTC
Date released
2026-03-15 20:57:28 UTC

Lineage

Lineage
1A

Files

annotations

Alignment and QC

Total SNPs
91
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:M29I
  • NS1:L169M
  • NS2B:A103F
  • NS3:T249P
  • NS3:N255S
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • capsid:I111S
  • env:K93R
  • env:T126I
  • env:I159A
  • env:V431I
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T428G
  • C483T
  • A630G
  • C660T
  • T699C
  • C933T
  • C969T
  • T1032C
  • C1134T
  • T1442C
  • C1465T
  • A1683G
  • A1863G
  • T1881C
  • A2208G
  • G2257A
  • G2556A
  • T2727C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:M29I
  • NS1:L169M

NS2B

  • NS2B:V103F

NS3

  • NS3:N255S

capsid

  • capsid:I111S

env

  • env:V159A
  • env:L167F
  • env:V431I
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue